C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000202773 RPL6-001 ENSG00000089009 9606 - 12:112405199-112409641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000202773
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000202773 227.380±0.00 164.386±0.00 58.782±0.00 119.680±26.56 187.304±48.75 248.052±126.49 56.891±24.33 186.728±70.62 136.153±12.10 183.371±95.32 116.639±3.34 430.458±324.73 263.210±19.52 132.959±67.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 TAS DNA binding
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120149 Gm6136-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000086958 Gm7027-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000120400 Gm14650-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000117897 Gm12390-001 processed_pseudogene Mus_musculus 0 274

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