C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089154 GCN1L1 9606 - 12:120127203-120194710 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300648 GCN1L1-001 120127203-120194710 protein_coding
  ENST00000547263 GCN1L1-007 120138016-120138938 retained_intron
  ENST00000547369 GCN1L1-004 120157953-120160303 retained_intron
  ENST00000548132 GCN1L1-006 120155029-120155687 retained_intron
  ENST00000548821 GCN1L1-009 120175790-120177790 retained_intron
  ENST00000549815 GCN1L1-008 120134600-120137390 retained_intron
  ENST00000550471 GCN1L1-003 120158460-120162234 retained_intron
  ENST00000551549 GCN1L1-002 120164671-120168414 retained_intron
  ENST00000551920 GCN1L1-005 120155348-120157114 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300648 6.646±0.00 5.774±0.00 2.416±0.00 3.651±0.80 4.945±0.37 3.492±1.28 2.745±0.78 1.999±1.58 2.481±0.30 2.313±0.52 12.275±7.45 5.636±1.19 4.107±1.71 6.496±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005840 NAS ribosome
GO:0006412 NAS translation
GO:0006417 IEA regulation of translation
GO:0008135 NAS translation factor activity, nucleic acid binding
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058419 gcn1l1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein_coding Danio_rerio
ENSMUSG00000041638 Gcn1l1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein_coding Mus_musculus

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