C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041638 Gcn1l1 10090 + 5:115565254-115622656 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064454 Gcn1l1-001 115565254-115622656 protein_coding
  ENSMUST00000094427 Gcn1l1-003 115605696-115622648 protein_coding
  ENSMUST00000122964 Gcn1l1-007 115609838-115610614 retained_intron
  ENSMUST00000125299 Gcn1l1-006 115582397-115587418 processed_transcript
  ENSMUST00000129424 Gcn1l1-002 115565276-115584747 retained_intron
  ENSMUST00000136041 Gcn1l1-004 115565274-115581280 retained_intron
  ENSMUST00000137523 Gcn1l1-009 115614872-115616019 retained_intron
  ENSMUST00000139933 Gcn1l1-008 115611831-115613389 processed_transcript
  ENSMUST00000141472 Gcn1l1-005 115565272-115584238 retained_intron
  ENSMUST00000151030 Gcn1l1-010 115582268-115622653 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064454ENSMUST00000094427ENSMUST00000151030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064454 10.669±3.96 11.677±1.05 3.803±0.71 11.048±2.33 11.443±4.54 9.509±1.58 6.145±2.03 9.338±1.43 4.612±1.42 13.334±1.84 5.084±0.63 16.198±5.48 9.486±4.81 12.750±1.82
ENSMUST00000094427 N/A 3.687±0.00 4.067±1.58 7.061±0.00 N/A 3.875±0.21 3.703±0.00 5.160±1.24 3.329±0.93 N/A 2.398±0.50 6.183±2.63 7.011±2.41 N/A
ENSMUST00000151030 N/A 4.580±1.10 N/A 10.327±0.00 3.827±0.73 2.728±0.36 N/A 2.233±0.12 1.450±0.00 2.860±0.00 1.119±0.00 6.914±1.87 7.337±2.02 8.741±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906
CIL_0004YR CIL_0004YR_0002 CGP 5:115565254-115647736

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058419 gcn1l1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein_coding Danio_rerio
ENSG00000089154 GCN1L1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein_coding Homo_sapiens

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