C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300648 GCN1L1-001 ENSG00000089154 9606 - 12:120127203-120194710 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300648
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300648 6.646±0.00 5.774±0.00 2.416±0.00 3.651±0.80 4.945±0.37 3.492±1.28 2.745±0.78 1.999±1.58 2.481±0.30 2.313±0.52 12.275±7.45 5.636±1.19 4.107±1.71 6.496±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005840 NAS ribosome
GO:0006412 NAS translation
GO:0006417 IEA regulation of translation
GO:0008135 NAS translation factor activity, nucleic acid binding
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064454 Gcn1l1-001 protein_coding Mus_musculus 0 9400
ENSMUST00000151030 Gcn1l1-010 processed_transcript Mus_musculus 0 4514
ENSMUST00000094427 Gcn1l1-003 protein_coding Mus_musculus 0 4043
ENSMUST00000141472 Gcn1l1-005 retained_intron Mus_musculus 0 1664
ENSMUST00000129424 Gcn1l1-002 retained_intron Mus_musculus 0 1526
ENSMUST00000122173 Gm13123-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000136041 Gcn1l1-004 retained_intron Mus_musculus 0 383
ENSMUST00000122964 Gcn1l1-007 retained_intron Mus_musculus 0 265

Loading