C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromogranin B (secretogranin 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089199 CHGB 9606 + 20:5911430-5925361 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000378961 CHGB-001 5911430-5925361 protein_coding
  ENST00000455042 CHGB-002 5911530-5923073 protein_coding
  ENST00000488832 CHGB-003 5915498-5917980 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378961ENST00000455042ENST00000488832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378961 0.018±0.00 0.229±0.00 0.127±0.00 46.048±35.41 0.163±0.01 2.104±1.71 1.920±1.80 7.921±0.00 0.412±0.00 0.044±0.00 0.335±0.32 5.243±4.58 0.298±0.26 9.634±0.28
ENST00000455042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.270±0.00 N/A 0.034±0.00 N/A
ENST00000488832 0.149±0.00 0.247±0.00 N/A N/A 0.074±0.00 N/A N/A N/A 0.046±0.00 0.090±0.00 0.083±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V9 CIL_0005V9_0001 CGP 20:5750393-5925361
CIL_0002HP CIL_0002HP_0001 CGP 20:5911430-5950558

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005179 TAS hormone activity
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0030141 IEA secretory granule

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000027350 Chgb chromogranin B protein_coding Mus_musculus

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