C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0005V9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171984-ENSG00000089199 CGP 9606 20:5750393-5925361
GeneTranscriptPositionBiotype
ENSG00000089199 (CHGB)
chromogranin B (secretogranin 1)
ENST00000378961 (CHGB-001) 5911430-5925361 protein_coding
ENST00000455042 (CHGB-002) 5911530-5923073 protein_coding
ENST00000488832 (CHGB-003) 5915498-5917980 processed_transcript
ENSG00000171984 (C20orf196)
chromosome 20 open reading frame 196
ENST00000303142 (C20orf196-001) 5750397-5863912 protein_coding
ENST00000378979 (C20orf196-005) 5750393-5773447 protein_coding
ENST00000442185 (C20orf196-003) 5750453-5863304 protein_coding
ENST00000445603 (C20orf196-004) 5750437-5863208 protein_coding
CIL_0005V9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044991-ENSMUSG00000027350 CGP 10090 2:132686931-132795079
GeneTranscriptPositionBiotype
ENSMUSG00000027350 (Chgb)
chromogranin B
ENSMUST00000028826 (Chgb-001) 132781278-132795079 protein_coding
ENSMUSG00000044991 (1110034G24Rik)
RIKEN cDNA 1110034G24 gene
ENSMUST00000061891 (1110034G24Rik-001) 132686931-132751055 protein_coding
ENSMUST00000110132 (1110034G24Rik-002) 132690283-132751055 protein_coding
ENSMUST00000141460 (1110034G24Rik-004) 132698119-132750582 processed_transcript
ENSMUST00000148271 (1110034G24Rik-003) 132690157-132750503 protein_coding
ENSMUSG00000064413 (Gm22245)
predicted gene, 22245
ENSMUST00000082479 (Gm22245-201) 132717106-132717208 snRNA
ENSMUSG00000084839 (Gm14097)
predicted gene 14097
ENSMUST00000147868 (Gm14097-001) 132694432-132698523 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005V9_0001ENSG00000089199ENST00000378961ENST00000455042ENST00000488832ENSG00000171984ENST00000303142ENST00000378979ENST00000442185ENST00000445603CIL_0005V9_0002ENSMUSG00000027350ENSMUST00000028826ENSMUSG00000044991ENSMUST00000061891ENSMUST00000110132ENSMUST00000141460ENSMUST00000148271ENSMUSG00000064413ENSMUST00000082479ENSMUSG00000084839ENSMUST00000147868
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005V9_0001ENSG00000089199ENST00000378961ENST00000455042ENST00000488832ENSG00000171984ENST00000303142ENST00000378979ENST00000442185ENST00000445603CIL_0005V9_0002ENSMUSG00000027350ENSMUST00000028826ENSMUSG00000044991ENSMUST00000061891ENSMUST00000110132ENSMUST00000148271ENSMUSG00000064413ENSMUST00000082479ENSMUSG00000084839ENSMUST00000147868
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089199 ENST00000378961 0.018±0.00 0.229±0.00 0.127±0.00 46.048±35.41 0.163±0.01 2.104±1.71 1.920±1.80 7.921±0.00 0.412±0.00 0.044±0.00 0.335±0.32 5.243±4.58 0.298±0.26 9.634±0.28
ENST00000455042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.270±0.00 N/A 0.034±0.00 N/A
ENST00000488832 0.149±0.00 0.247±0.00 N/A N/A 0.074±0.00 N/A N/A N/A 0.046±0.00 0.090±0.00 0.083±0.00 N/A N/A N/A
ENSG00000171984 ENST00000303142 0.300±0.00 2.662±0.00 N/A 1.111±0.19 0.643±0.47 2.189±0.00 0.398±0.35 0.606±0.50 0.127±0.08 0.290±0.00 1.320±1.15 2.803±1.96 2.364±1.69 1.424±0.81
ENST00000378979 0.432±0.00 1.340±0.00 0.334±0.00 N/A 0.826±0.00 1.655±0.00 0.722±0.00 0.796±0.00 0.334±0.00 0.711±0.06 0.424±0.26 3.851±0.00 0.774±0.24 0.717±0.28
ENST00000442185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.454±0.00 N/A
ENST00000445603 1.051±0.00 1.865±0.00 0.146±0.00 0.583±0.18 0.520±0.00 0.355±0.00 N/A N/A N/A 0.257±0.00 N/A 0.774±0.56 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027350 ENSMUST00000028826 0.026±0.00 146.185±50.13 0.101±0.01 133.733±168.24 0.046±0.03 18.624±8.41 0.069±0.03 0.078±0.05 0.059±0.06 0.138±0.07 0.021±0.01 0.162±0.11 0.165±0.20 3.467±4.03
ENSMUSG00000044991 ENSMUST00000061891 6.560±1.17 7.131±1.41 4.665±0.41 4.197±2.49 6.346±1.46 4.369±1.51 14.958±5.10 5.772±1.01 6.017±2.08 6.705±1.44 2.916±0.57 6.371±2.29 5.530±2.87 0.996±0.38
ENSMUST00000110132 1.563±0.63 1.673±0.64 1.249±0.20 1.496±0.89 1.867±0.40 1.057±0.22 N/A 1.341±0.19 0.661±0.19 2.449±0.75 0.462±0.11 2.694±1.37 N/A 0.317±0.07
ENSMUST00000141460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A 2.398±0.00 N/A
ENSMUSG00000064413 ENSMUST00000082479 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3595.920±0.00 N/A N/A N/A N/A
ENSMUSG00000084839 ENSMUST00000147868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.097±0.00 N/A N/A N/A

Loading