C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transferrin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000091513 TF 9606 + 3:133745956-133779006 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402696 TF-001 133745956-133779006 protein_coding
  ENST00000414694 TF-006 133746393-133754582 nonsense_mediated_decay
  ENST00000460531 TF-009 133746393-133754080 retained_intron
  ENST00000461695 TF-014 133766278-133778782 nonsense_mediated_decay
  ENST00000462495 TF-007 133768032-133770956 retained_intron
  ENST00000466911 TF-016 133746040-133754528 protein_coding
  ENST00000467842 TF-004 133772752-133778784 retained_intron
  ENST00000474287 TF-005 133746328-133753910 retained_intron
  ENST00000475382 TF-010 133747150-133754663 processed_transcript
  ENST00000482271 TF-008 133746393-133756923 protein_coding
  ENST00000485977 TF-011 133746393-133759293 nonsense_mediated_decay
  ENST00000493011 TF-017 133746393-133755811 retained_intron
  ENST00000494430 TF-013 133746393-133755414 nonsense_mediated_decay
  ENST00000498622 TF-012 133748140-133754659 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402696ENST00000461695ENST00000462495ENST00000467842ENST00000482271ENST00000485977
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402696 N/A N/A N/A 104.598±82.01 0.884±0.00 0.615±0.00 N/A 423.404±0.00 N/A N/A 0.204±0.00 0.235±0.17 0.088±0.01 9.869±9.45
ENST00000461695 2.513±0.00 0.309±0.00 N/A 439.865±0.00 16.659±0.00 0.910±0.00 0.438±0.00 N/A 522.499±0.00 0.533±0.33 N/A 0.394±0.00 0.104±0.00 3.000±0.00
ENST00000462495 N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A 0.179±0.00 N/A N/A N/A
ENST00000467842 N/A 0.042±0.00 N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A 0.033±0.00 0.030±0.00 0.021±0.00 N/A
ENST00000482271 N/A N/A N/A N/A N/A 1.345±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485977 N/A 0.499±0.00 1.213±0.00 N/A N/A 1.160±0.00 N/A N/A N/A 1.555±0.00 N/A N/A 0.183±0.01 2.503±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001895 IEP retina homeostasis
GO:0002576 TAS platelet degranulation
GO:0005515 IPI protein binding
GO:0005576 IEA:NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005905 IDA coated pit
GO:0006826 IEA iron ion transport
GO:0006879 IEA:TAS cellular iron ion homeostasis
GO:0007596 TAS blood coagulation
GO:0008199 IEA ferric iron binding
GO:0009925 IDA basal plasma membrane
GO:0009986 IDA cell surface
GO:0010008 TAS endosome membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016324 IDA apical plasma membrane
GO:0030139 IDA endocytic vesicle
GO:0030168 TAS platelet activation
GO:0031625 IEA ubiquitin protein ligase binding
GO:0031982 IDA vesicle
GO:0033572 TAS transferrin transport
GO:0034774 TAS secretory granule lumen
GO:0045178 IDA basal part of cell
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055037 IDA recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016771 tfa transferrin-a protein_coding Danio_rerio
ENSMUSG00000032554 Trf transferrin protein_coding Mus_musculus
ENSMUSG00000090639 Gm20425 predicted gene 20425 protein_coding Mus_musculus

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