C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transferrin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032554 Trf 10090 - 9:103204001-103230444 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035158 Trf-001 103208795-103230444 protein_coding
  ENSMUST00000112503 Trf-008 103220895-103222675 retained_intron
  ENSMUST00000112645 Trf-002 103204001-103230273 protein_coding
  ENSMUST00000126359 Trf-003 103223085-103228442 protein_coding
  ENSMUST00000164377 Trf-005 103215814-103230270 nonsense_mediated_decay
  ENSMUST00000165296 Trf-006 103222097-103230266 protein_coding
  ENSMUST00000168142 Trf-010 103210568-103219866 protein_coding
  ENSMUST00000170904 Trf-009 103210636-103222063 protein_coding
  ENSMUST00000190051 Trf-011 103209025-103212006 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035158ENSMUST00000112645ENSMUST00000164377ENSMUST00000165296ENSMUST00000170904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035158 324.613±142.12 41.470±11.00 95.354±5.45 4.005±0.00 236.699±26.04 19.304±2.76 14.487±4.65 24.776±4.81 1298.992±404.47 100.105±12.27 6.000±2.98 72.049±32.03 65.132±13.02 N/A
ENSMUST00000112645 234.618±49.60 N/A N/A 72.754±0.00 N/A N/A N/A N/A 1201.711±587.04 24.201±0.00 N/A 36.068±20.87 256.497±0.00 N/A
ENSMUST00000164377 N/A 140.858±33.88 N/A N/A 360.491±21.60 N/A N/A N/A 3456.390±188.43 N/A N/A 110.082±12.94 N/A N/A
ENSMUST00000165296 N/A 276.946±143.20 N/A N/A 641.728±94.62 53.301±8.88 N/A 40.570±1.60 5467.243±1047.58 242.666±73.89 N/A 162.604±52.01 N/A N/A
ENSMUST00000170904 N/A N/A N/A 422.421±0.00 N/A N/A N/A N/A N/A N/A N/A 301.156±123.20 1091.272±1036.70 15.949±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005905 IDA coated pit
GO:0006826 IMP iron ion transport
GO:0006879 IEA cellular iron ion homeostasis
GO:0007015 IDA actin filament organization
GO:0007257 IDA activation of JUN kinase activity
GO:0008199 IEA ferric iron binding
GO:0030120 ISO vesicle coat
GO:0030139 IDA endocytic vesicle
GO:0030316 IDA osteoclast differentiation
GO:0042327 IDA positive regulation of phosphorylation
GO:0045780 IDA positive regulation of bone resorption
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0055037 IDA recycling endosome
GO:0060395 IDA SMAD protein signal transduction
GO:0070371 IDA ERK1 and ERK2 cascade
GO:0097433 ISO dense body
GO:2000147 IDA positive regulation of cell motility

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016771 tfa transferrin-a protein_coding Danio_rerio
ENSG00000091513 TF transferrin protein_coding Homo_sapiens

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