C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TERF1 (TRF1)-interacting nuclear factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092330 TINF2 9606 - 14:24239643-24242674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267415 TINF2-001 24239643-24242674 protein_coding
  ENST00000399423 TINF2-002 24239643-24242663 protein_coding
  ENST00000557830 TINF2-009 24241391-24242077 retained_intron
  ENST00000557915 TINF2-013 24239795-24240598 retained_intron
  ENST00000557921 TINF2-010 24241696-24242558 protein_coding
  ENST00000558476 TINF2-008 24240603-24242585 protein_coding
  ENST00000558510 TINF2-007 24241730-24242635 processed_transcript
  ENST00000558566 TINF2-004 24239682-24242613 protein_coding
  ENST00000558703 TINF2-015 24239643-24240242 retained_intron
  ENST00000559019 TINF2-006 24240483-24242632 protein_coding
  ENST00000559147 TINF2-012 24241114-24242342 retained_intron
  ENST00000559549 TINF2-011 24240579-24241436 retained_intron
  ENST00000559969 TINF2-005 24239679-24242288 protein_coding
  ENST00000560019 TINF2-014 24239643-24240474 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267415ENST00000399423ENST00000557915ENST00000558476ENST00000558566ENST00000559019ENST00000559147ENST00000559549ENST00000559969ENST00000560019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267415 N/A N/A N/A N/A 3.682±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399423 10.754±0.00 21.084±0.00 N/A 5.441±3.06 6.044±4.06 3.603±1.24 3.031±0.94 5.389±0.00 3.501±0.27 6.205±4.56 7.918±0.00 13.689±9.16 19.081±1.99 3.935±0.00
ENST00000557915 N/A N/A N/A N/A N/A N/A N/A 2.915±0.00 N/A N/A 10.002±0.00 N/A N/A 7.809±0.00
ENST00000558476 N/A N/A N/A N/A N/A N/A N/A 5.520±3.36 N/A N/A N/A N/A N/A N/A
ENST00000558566 5.295±0.00 N/A 0.994±0.00 N/A N/A N/A 2.737±0.00 N/A N/A 11.891±0.00 N/A 7.703±0.00 7.247±1.25 3.812±0.00
ENST00000559019 N/A N/A 1.663±0.00 3.806±0.00 N/A N/A N/A N/A 4.598±1.28 N/A 10.845±0.00 3.345±0.00 N/A N/A
ENST00000559147 N/A N/A 1.353±0.00 N/A N/A N/A N/A 5.915±0.00 N/A 5.886±0.00 7.295±0.00 N/A N/A N/A
ENST00000559549 N/A N/A N/A N/A 3.333±0.00 2.636±0.00 1.639±0.00 N/A 3.399±0.00 6.183±0.00 N/A N/A N/A N/A
ENST00000559969 5.548±0.00 N/A N/A 5.596±0.00 8.268±0.00 6.327±0.00 N/A 4.234±3.24 2.236±0.00 7.666±0.00 N/A 13.166±0.00 21.674±0.00 9.007±0.53
ENST00000560019 8.143±0.00 24.128±0.00 N/A 7.901±0.00 13.131±0.00 7.023±0.00 N/A 7.643±0.00 3.876±0.00 N/A N/A 14.894±7.02 15.457±0.00 8.517±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SA CIL_0001SA_0001 CGP 14:24232422-24242674
CIL_0001SE CIL_0001SE_0001 CGP 14:24239643-24264432

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 TAS telomere maintenance
GO:0000781 IDA chromosome, telomeric region
GO:0000783 IDA nuclear telomere cap complex
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0010370 IDA perinucleolar chromocenter
GO:0010833 IMP telomere maintenance via telomere lengthening
GO:0010836 IGI negative regulation of protein ADP-ribosylation
GO:0032202 IMP telomere assembly
GO:0032205 IEA negative regulation of telomere maintenance
GO:0032206 IMP positive regulation of telomere maintenance
GO:0032211 IGI negative regulation of telomere maintenance via telomerase
GO:0034502 IMP protein localization to chromosome
GO:0042162 IDA telomeric DNA binding
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0070198 IMP protein localization to chromosome, telomeric region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000007589 Tinf2 Terf1 (TRF1)-interacting nuclear factor 2 protein_coding Mus_musculus

Loading