C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TBC1 domain family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095383 TBC1D2 9606 - 9:98198999-98255721 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342112 TBC1D2-003 98199029-98255590 protein_coding
  ENST00000375063 TBC1D2-006 98199026-98213550 protein_coding
  ENST00000375064 TBC1D2-001 98199029-98255580 protein_coding
  ENST00000375066 TBC1D2-002 98199029-98255633 protein_coding
  ENST00000465784 TBC1D2-201 98198999-98255721 protein_coding
  ENST00000493589 TBC1D2-005 98208675-98229083 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342112ENST00000375063ENST00000375064ENST00000375066ENST00000465784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342112 1.090±0.00 1.582±0.00 N/A 0.411±0.33 N/A N/A 0.222±0.00 1.414±0.00 0.467±0.14 2.231±1.51 0.441±0.22 2.930±1.62 2.168±1.04 0.943±0.44
ENST00000375063 N/A N/A 0.268±0.00 0.904±0.00 N/A N/A 0.035±0.00 1.000±0.00 N/A N/A N/A N/A N/A N/A
ENST00000375064 1.807±0.00 N/A N/A 0.514±0.00 1.762±0.00 2.169±0.00 0.167±0.00 0.732±0.00 0.447±0.00 2.252±1.35 N/A 1.210±0.58 1.815±0.99 0.934±0.00
ENST00000375066 N/A 0.494±0.00 N/A 0.600±0.00 0.946±0.00 0.441±0.00 0.241±0.00 N/A 0.865±0.00 N/A N/A 1.043±0.34 1.286±0.00 N/A
ENST00000465784 1.525±0.00 1.503±0.00 N/A N/A N/A 1.191±0.00 N/A 1.070±0.00 0.408±0.00 0.830±0.00 N/A 1.986±0.77 2.969±1.58 0.945±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029Y CIL_00029Y_0001 CGP 9:98120975-98255721
CIL_00029Z CIL_00029Z_0001 CGP 9:98198999-98709197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IDA:IEA Rab GTPase activator activity
GO:0030054 IDA cell junction
GO:0031410 IDA cytoplasmic vesicle
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0045296 IPI cadherin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071304 TBC1D2 TBC1 domain family, member 2 protein_coding Danio_rerio
ENSMUSG00000039813 Tbc1d2 TBC1 domain family, member 2 protein_coding Mus_musculus

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