C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095539 SEMA4G 9606 + 10:100969518-100985871 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000210633 SEMA4G-001 100972835-100985615 protein_coding
  ENST00000370250 SEMA4G-002 100972540-100984837 protein_coding
  ENST00000476171 SEMA4G-004 100983717-100984790 protein_coding
  ENST00000484128 SEMA4G-012 100984212-100985871 processed_transcript
  ENST00000517724 SEMA4G-008 100972712-100985258 protein_coding
  ENST00000518124 SEMA4G-009 100969527-100978371 protein_coding
  ENST00000518244 SEMA4G-010 100969530-100972885 processed_transcript
  ENST00000518948 SEMA4G-011 100980860-100981420 retained_intron
  ENST00000519649 SEMA4G-007 100969518-100980920 protein_coding
  ENST00000519756 SEMA4G-013 100972995-100979268 processed_transcript
  ENST00000521006 SEMA4G-003 100969523-100985616 nonsense_mediated_decay
  ENST00000613292 SEMA4G-201 100984311-100985613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLiverOvaryENST00000210633ENST00000517724ENST00000519649ENST00000521006ENST00000613292
Transcript ID Bladder Colon Kidney Liver Ovary
ENST00000210633 0.666±0.00 N/A N/A 5.626±0.00 4.500±2.41
ENST00000517724 N/A 2.284±0.00 N/A N/A N/A
ENST00000519649 0.903±0.00 N/A 4.302±0.00 N/A 2.750±0.00
ENST00000521006 N/A N/A 1.739±0.00 4.262±0.00 N/A
ENST00000613292 N/A N/A N/A 20.015±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0001CA CIL_0001CA_0002 CGP 10:100969458-100987515

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076595 sema4ga sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga protein_coding Danio_rerio
ENSDARG00000088143 SEMA4G (2 of 2) sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G protein_coding Danio_rerio
ENSMUSG00000025207 Sema4g sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G protein_coding Mus_musculus

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