C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025207 Sema4g 10090 + 19:44989101-45003397 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026225 Sema4g-001 44989101-45003397 protein_coding
  ENSMUST00000130549 Sema4g-002 44989291-45003397 nonsense_mediated_decay
  ENSMUST00000179305 Sema4g-201 44992136-45003394 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026225ENSMUST00000130549ENSMUST00000179305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026225 1.558±0.98 1.642±0.48 12.467±3.55 23.945±1.29 0.405±0.04 60.725±7.69 0.142±0.04 14.855±2.85 31.799±17.17 0.992±0.22 0.088±0.00 2.413±0.72 3.562±2.46 0.840±0.07
ENSMUST00000130549 1.090±0.21 1.783±0.47 8.430±2.55 29.542±1.69 N/A 76.065±4.85 N/A 13.171±1.90 32.346±21.33 0.632±0.07 N/A 2.060±0.50 3.658±1.87 2.142±0.09
ENSMUST00000179305 0.685±0.16 1.990±0.89 6.126±0.00 3.925±0.00 1.369±0.19 148.827±28.12 0.139±0.00 6.511±3.08 57.832±36.05 2.090±0.22 0.120±0.03 4.887±0.93 5.408±3.39 0.657±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0000EY CIL_0000EY_0002 CGP 19:44931119-45003397

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076595 sema4ga sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga protein_coding Danio_rerio
ENSDARG00000088143 SEMA4G (2 of 2) sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G protein_coding Danio_rerio
ENSG00000095539 SEMA4G sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G protein_coding Homo_sapiens

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