C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000210633 SEMA4G-001 ENSG00000095539 9606 + 10:100972835-100985615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverOvaryENST00000210633
Transcript ID Bladder Liver Ovary
ENST00000210633 0.666±0.00 5.626±0.00 4.500±2.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0001CA CIL_0001CA_0002 CGP 10:100969458-100987515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179305 Sema4g-201 protein_coding Mus_musculus 0 3459
ENSMUST00000026225 Sema4g-001 protein_coding Mus_musculus 0 3459
ENSMUST00000130549 Sema4g-002 nonsense_mediated_decay Mus_musculus 0 3243

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