Warning (512) : _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php , line 323 ]Code Context ),
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$success = false Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108 Warning (512) : _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php , line 323 ]Code Context ),
E_USER_WARNING
); $key = 'default_citloci_list'
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$success = false Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108 Warning (512) : _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php , line 323 ]Code Context ),
E_USER_WARNING
); $key = 'default_citloci_list'
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(int) 4 => 'expressed_transcripts',
(int) 5 => 'external_accessions',
(int) 6 => 'genes',
(int) 7 => 'go_annotations',
(int) 8 => 'homologues',
(int) 9 => 'maptranscripttoregion',
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'lock' => true,
'isWindows' => false,
'mask' => (int) 436,
'probability' => (int) 100,
'groups' => array()
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$success = false Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108 Warning (512) : _cake_model_ cache was unable to write 'default_citloci_genes' to File cache [CORE/Cake/Cache/Cache.php , line 323 ]Code Context ),
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$config = '_cake_model_'
$settings = array(
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'engine' => 'File',
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'duration' => (int) 10,
'lock' => true,
'isWindows' => false,
'mask' => (int) 436,
'probability' => (int) 100,
'groups' => array()
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$success = false Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::_cacheDescription() - CORE/Cake/Model/Datasource/DataSource.php, line 310
DataSource::describe() - CORE/Cake/Model/Datasource/DataSource.php, line 135
Mysql::describe() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 332
Model::schema() - CORE/Cake/Model/Model.php, line 1372
DboSource::fields() - CORE/Cake/Model/Datasource/DboSource.php, line 2491
DboSource::read() - CORE/Cake/Model/Datasource/DboSource.php, line 1054
Model::_readDataSource() - CORE/Cake/Model/Model.php, line 2947
Model::find() - CORE/Cake/Model/Model.php, line 2919
DboSource::query() - CORE/Cake/Model/Datasource/DboSource.php, line 597
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
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E_USER_WARNING
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DataSource::_cacheDescription() - CORE/Cake/Model/Datasource/DataSource.php, line 310
Mysql::describe() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 372
Model::schema() - CORE/Cake/Model/Model.php, line 1372
DboSource::fields() - CORE/Cake/Model/Datasource/DboSource.php, line 2491
DboSource::read() - CORE/Cake/Model/Datasource/DboSource.php, line 1054
Model::_readDataSource() - CORE/Cake/Model/Model.php, line 2947
Model::find() - CORE/Cake/Model/Model.php, line 2919
DboSource::query() - CORE/Cake/Model/Datasource/DboSource.php, line 597
Model::__call() - CORE/Cake/Model/Model.php, line 808
Gene::findByid() - APP/Controller/GeneController.php, line 302
GeneController::show() - APP/Controller/GeneController.php, line 302
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Institute of Cardiovascular Regeneration Webtool Repository
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Expression Patterns
Heat Map
Numeric Values
Transcript ';
Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis ENST00000381652 ENST00000487310
Transcript ID
Adipose
Adrenal
Bladder
Brain
Breast
Colon
Heart
Kidney
Liver
Lung
Muscle
Ovary
Placenta
Testis
ENST00000381652
4.178±0.00
3.797±0.00
0.493±0.00
2.476±0.94
3.696±1.17
1.963±0.00
6.641±0.00
2.685±0.00
2.282±1.81
7.536±3.60
1.453±0.06
1.695±1.00
1.256±0.52
5.147±0.57
ENST00000487310
N/A
N/A
N/A
N/A
N/A
N/A
N/A
N/A
N/A
N/A
N/A
1.019±0.00
N/A
N/A
Conserved Regions
Region ID Sub-Region Region Type Position
CIL_0000NF
CIL_0000NF_0001
CGP
9:4792834-5128183
CIL_0000NG
CIL_0000NG_0001
CGP
9:4985033-5185668
Gene Ontology
GO ID Evidence Type GO Description
GO:0000186
IEA
activation of MAPKK activity
GO:0004672
NAS:IEA
protein kinase activity
GO:0004713
ISS:IEA
protein tyrosine kinase activity
GO:0004715
IEA
non-membrane spanning protein tyrosine kinase activity
GO:0005102
IPI
receptor binding
GO:0005131
ISS
growth hormone receptor binding
GO:0005143
ISS
interleukin-12 receptor binding
GO:0005515
IPI
protein binding
GO:0005524
IEA
ATP binding
GO:0005634
IDA
nucleus
GO:0005737
IDA
cytoplasm
GO:0005829
TAS
cytosol
GO:0005856
IEA
cytoskeleton
GO:0005901
ISS
caveola
GO:0006468
TAS:IEA
protein phosphorylation
GO:0006915
ISS
apoptotic process
GO:0006919
ISS
activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006928
TAS
cellular component movement
GO:0006979
IEA
response to oxidative stress
GO:0007165
ISS
signal transduction
GO:0007167
ISS
enzyme linked receptor protein signaling pathway
GO:0007186
IEA
G-protein coupled receptor signaling pathway
GO:0007204
IEA
positive regulation of cytosolic calcium ion concentration
GO:0007259
TAS
JAK-STAT cascade
GO:0007260
ISS
tyrosine phosphorylation of STAT protein
GO:0007262
ISS
STAT protein import into nucleus
GO:0007498
TAS
mesoderm development
GO:0007596
TAS
blood coagulation
GO:0008022
IEA
protein C-terminus binding
GO:0008284
IEA
positive regulation of cell proliferation
GO:0008285
ISS
negative regulation of cell proliferation
GO:0008631
IEA
intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0009755
IEA
hormone-mediated signaling pathway
GO:0010811
IDA
positive regulation of cell-substrate adhesion
GO:0014068
ISS
positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020
IEA
membrane
GO:0016363
IEA
nuclear matrix
GO:0016772
IEA
transferase activity, transferring phosphorus-containing groups
GO:0018108
ISS
peptidyl-tyrosine phosphorylation
GO:0019221
ISS
cytokine-mediated signaling pathway
GO:0019901
IDA
protein kinase binding
GO:0020037
IDA
heme binding
GO:0022408
IEA
negative regulation of cell-cell adhesion
GO:0030041
NAS
actin filament polymerization
GO:0030099
IEA
myeloid cell differentiation
GO:0030154
ISS
cell differentiation
GO:0030218
ISS
erythrocyte differentiation
GO:0030335
IEA
positive regulation of cell migration
GO:0031103
IEA
axon regeneration
GO:0031702
IEA
type 1 angiotensin receptor binding
GO:0031904
TAS
endosome lumen
GO:0031959
IEA
mineralocorticoid receptor signaling pathway
GO:0032024
IEA
positive regulation of insulin secretion
GO:0032496
ISS
response to lipopolysaccharide
GO:0032516
IEA
positive regulation of phosphoprotein phosphatase activity
GO:0032731
IEA
positive regulation of interleukin-1 beta production
GO:0032760
ISS
positive regulation of tumor necrosis factor production
GO:0033130
IEA
acetylcholine receptor binding
GO:0033160
IEA
positive regulation of protein import into nucleus, translocation
GO:0033194
IEA
response to hydroperoxide
GO:0033209
IDA
tumor necrosis factor-mediated signaling pathway
GO:0034050
IEA
host programmed cell death induced by symbiont
GO:0034612
IDA
response to tumor necrosis factor
GO:0035401
IDA
histone kinase activity (H3-Y41 specific)
GO:0035409
IDA
histone H3-Y41 phosphorylation
GO:0035556
ISS:IEA
intracellular signal transduction
GO:0035722
IDA
interleukin-12-mediated signaling pathway
GO:0042169
IPI
SH2 domain binding
GO:0042393
IDA
histone binding
GO:0042503
IEA
tyrosine phosphorylation of Stat3 protein
GO:0042506
IEA
tyrosine phosphorylation of Stat5 protein
GO:0042508
IEA
tyrosine phosphorylation of Stat1 protein
GO:0042517
ISS
positive regulation of tyrosine phosphorylation of Stat3 protein
GO:0042523
ISS
positive regulation of tyrosine phosphorylation of Stat5 protein
GO:0042977
ISS
activation of JAK2 kinase activity
GO:0043065
IEA
positive regulation of apoptotic process
GO:0043066
IEA
negative regulation of apoptotic process
GO:0043388
IEA
positive regulation of DNA binding
GO:0043392
ISS
negative regulation of DNA binding
GO:0043524
IEA
negative regulation of neuron apoptotic process
GO:0043548
IEA
phosphatidylinositol 3-kinase binding
GO:0043560
IEA
insulin receptor substrate binding
GO:0045121
ISS
membrane raft
GO:0045429
IEA
positive regulation of nitric oxide biosynthetic process
GO:0045597
IEA
positive regulation of cell differentiation
GO:0045822
IEA
negative regulation of heart contraction
GO:0045944
IEA
positive regulation of transcription from RNA polymerase II promoter
GO:0046677
IDA
response to antibiotic
GO:0046777
ISS
protein autophosphorylation
GO:0048008
IEA
platelet-derived growth factor receptor signaling pathway
GO:0050727
IDA
regulation of inflammatory response
GO:0050729
IEA
positive regulation of inflammatory response
GO:0050731
ISS
positive regulation of peptidyl-tyrosine phosphorylation
GO:0050867
IEA
positive regulation of cell activation
GO:0051091
IEA
positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051428
IEA
peptide hormone receptor binding
GO:0051770
ISS
positive regulation of nitric-oxide synthase biosynthetic process
GO:0060333
TAS
interferon-gamma-mediated signaling pathway
GO:0060334
TAS
regulation of interferon-gamma-mediated signaling pathway
GO:0060396
IDA
growth hormone receptor signaling pathway
GO:0060397
ISS
JAK-STAT cascade involved in growth hormone signaling pathway
GO:0060399
ISS
positive regulation of growth hormone receptor signaling pathway
GO:0061180
ISS
mammary gland epithelium development
GO:0070671
IDA
response to interleukin-12
GO:0097191
ISS
extrinsic apoptotic signaling pathway
GO:0097296
ISS
activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
GO:2001235
IEA
positive regulation of apoptotic signaling pathway
Homologs
ENSEMBL Accession
Gene Name
Description
Biotype
Species
ENSDARG00000018882
jak2b
Janus kinase 2b
protein_coding
Danio_rerio
ENSMUSG00000024789
Jak2
Janus kinase 2
protein_coding
Mus_musculus
Loading
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'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
'prefix' => '*****',
'engine' => 'File',
'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
'serialize' => true,
'duration' => (int) 10,
'lock' => true,
'isWindows' => false,
'mask' => (int) 436,
'probability' => (int) 100,
'groups' => array()
)
$success = false Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ?? Warning (512) : _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php , line 323 ]Code Context ),
E_USER_WARNING
); $key = 'method_cache'
$value = array(
(int) 0 => false,
'name' => array(
'45b989c52610ac6d773f6b83d6108190' => '`citloci`',
'4d0d73f550e4b0573d9cf666d63a0244' => '`genes`',
'003d5968b53baeeb0cb27d56c4d447af' => '`Gene`.`id`',
'f32f1dc049466870a2299961f0604112' => '`Gene`.`gene_version`',
'433a39b330b04a021541e6fa89d80ffd' => '`Gene`.`tax_id`',
'56705ff3488da428f13156180dbc9fbc' => '`Gene`.`assembly`',
'b7d572bb36c8f0f2ecfe36921c14fbf3' => '`Gene`.`chromosome`',
'edf6b12f8a40424f91fa0a40f0eab275' => '`Gene`.`strand`',
'71d92ec0ad29837870abd0de3ae8addc' => '`Gene`.`start`',
'62e43d606bf4cdae2d6694c62e19e7fa' => '`Gene`.`end`',
'7043386674301bd31c5e629dfdadabd4' => '`Gene`.`gene_name`',
'f1454297621ddcf07c418e47f67d3857' => '`Gene`.`gene_source`',
'27d53785bfcd771f1901030b4bb87d02' => '`Gene`.`gene_biotype`',
'b93574bf8a03f2d6f6486e920115e0d1' => '`Gene`.`annotation_version`',
'1c4a3f5d90070e8ea1c62ca077df603e' => '`Gene`.`gene_description`',
'8ca7a0c53312b8ae3cfa40a9d814adac' => '`Gene`'
),
'fields' => array(
'0ea8c82680a14e2566476c4ab527af47' => array(
(int) 0 => '`Gene`.`id`',
(int) 1 => '`Gene`.`gene_version`',
(int) 2 => '`Gene`.`tax_id`',
(int) 3 => '`Gene`.`assembly`',
(int) 4 => '`Gene`.`chromosome`',
(int) 5 => '`Gene`.`strand`',
(int) 6 => '`Gene`.`start`',
(int) 7 => '`Gene`.`end`',
(int) 8 => '`Gene`.`gene_name`',
(int) 9 => '`Gene`.`gene_source`',
(int) 10 => '`Gene`.`gene_biotype`',
(int) 11 => '`Gene`.`annotation_version`',
(int) 12 => '`Gene`.`gene_description`'
)
)
)
$config = '_cake_core_'
$settings = array(
'prefix' => '*****',
'engine' => 'File',
'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
'serialize' => true,
'duration' => (int) 10,
'lock' => true,
'isWindows' => false,
'mask' => (int) 436,
'probability' => (int) 100,
'groups' => array()
)
$success = false Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??