C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein D3 polypeptide 18kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100028 SNRPD3 9606 + 22:24555503-24609980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000215829 SNRPD3-001 24555503-24572772 protein_coding
  ENST00000402849 SNRPD3-003 24556007-24582052 protein_coding
  ENST00000404603 SNRPD3-005 24556009-24609980 nonsense_mediated_decay
  ENST00000439775 SNRPD3-004 24556032-24609150 nonsense_mediated_decay
  ENST00000468770 SNRPD3-002 24555958-24558086 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverLungOvaryPlacentaTestisENST00000215829ENST00000404603
Transcript ID Adrenal Colon Liver Lung Ovary Placenta Testis
ENST00000215829 N/A 5.175±0.00 N/A 9.447±0.00 18.525±0.15 12.237±1.34 N/A
ENST00000404603 54.680±0.00 41.867±0.00 88.298±0.00 49.714±0.00 70.602±5.17 32.374±0.91 32.938±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y8 CIL_0006Y8_0002 CGP 22:24494107-24555935
CIL_0006YG CIL_0006YG_0002 CGP 22:24540423-24609980

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0019899 IPI enzyme binding
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071208 ISS histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013800 snrpd3 small nuclear ribonucleoprotein D3 polypeptide protein_coding Danio_rerio
ENSDARG00000076283 snrpd3l small nuclear ribonucleoprotein D3 polypeptide, like protein_coding Danio_rerio
ENSMUSG00000020180 Snrpd3 small nuclear ribonucleoprotein D3 protein_coding Mus_musculus

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