C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D3 polypeptide 18kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404603 SNRPD3-005 ENSG00000100028 9606 + 22:24556009-24609980 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverLungOvaryPlacentaTestisENST00000404603
Transcript ID Adrenal Colon Liver Lung Ovary Placenta Testis
ENST00000404603 54.680±0.00 41.867±0.00 88.298±0.00 49.714±0.00 70.602±5.17 32.374±0.91 32.938±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y8 CIL_0006Y8_0002 CGP 22:24494107-24555935
CIL_0006YG CIL_0006YG_0002 CGP 22:24540423-24609980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0019899 IPI enzyme binding
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071208 ISS histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020397 Snrpd3-001 protein_coding Mus_musculus 0 577
ENSDART00000114294 snrpd3l-001 protein_coding Danio_rerio 0 361
ENSMUST00000191097 Snrpd3-002 retained_intron Mus_musculus 2.00386e-43 180

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