C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: target of myb1 (chicken)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100284 TOM1 9606 + 22:35299275-35347994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382034 TOM1-201 35299869-35347972 protein_coding
  ENST00000395736 TOM1-013 35299890-35323810 nonsense_mediated_decay
  ENST00000404284 TOM1-003 35299856-35347973 nonsense_mediated_decay
  ENST00000411850 TOM1-202 35299804-35347992 protein_coding
  ENST00000424387 TOM1-002 35299884-35347981 nonsense_mediated_decay
  ENST00000425375 TOM1-203 35299804-35347992 protein_coding
  ENST00000439512 TOM1-011 35299874-35327338 nonsense_mediated_decay
  ENST00000443206 TOM1-012 35311062-35323819 protein_coding
  ENST00000447733 TOM1-204 35299275-35347992 protein_coding
  ENST00000449058 TOM1-001 35299804-35347994 protein_coding
  ENST00000449508 TOM1-009 35299894-35323874 nonsense_mediated_decay
  ENST00000456128 TOM1-008 35299800-35333492 protein_coding
  ENST00000465529 TOM1-005 35299866-35318316 retained_intron
  ENST00000487670 TOM1-007 35299871-35322612 retained_intron
  ENST00000491987 TOM1-015 35323868-35338788 retained_intron
  ENST00000492723 TOM1-004 35344186-35347983 retained_intron
  ENST00000497448 TOM1-014 35323340-35323914 retained_intron
  ENST00000608674 TOM1-017 35299376-35323603 protein_coding
  ENST00000608749 TOM1-016 35299275-35323630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382034ENST00000395736ENST00000411850ENST00000424387ENST00000439512ENST00000443206ENST00000449058ENST00000456128ENST00000491987ENST00000492723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382034 N/A N/A N/A 10.138±0.00 9.473±0.00 1.135±0.00 1.529±0.00 N/A N/A N/A N/A N/A N/A 12.222±0.00
ENST00000395736 N/A N/A N/A N/A N/A N/A 1.921±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000411850 N/A N/A N/A N/A 3.461±1.09 N/A 5.747±0.00 6.165±0.00 N/A 4.828±0.00 4.173±0.00 4.835±0.02 10.565±3.12 N/A
ENST00000424387 17.263±0.00 9.851±0.00 1.731±0.00 12.302±0.00 17.310±0.00 6.087±4.51 N/A 9.750±0.00 6.688±0.00 5.090±0.00 N/A 7.255±0.00 15.419±1.49 12.367±4.46
ENST00000439512 N/A N/A 3.054±0.00 6.621±0.00 N/A N/A 1.229±0.00 7.517±0.00 2.091±0.00 N/A N/A 3.241±0.00 N/A N/A
ENST00000443206 N/A N/A N/A N/A N/A 1.478±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449058 N/A N/A N/A 6.424±0.00 N/A 0.563±0.00 7.185±6.37 6.217±1.03 8.062±6.23 10.120±6.32 74.424±62.50 9.023±4.64 21.129±7.88 10.760±0.00
ENST00000456128 12.816±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.111±0.43 N/A N/A
ENST00000491987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.869±0.00 24.091±0.00 13.624±0.00
ENST00000492723 N/A 1.872±0.00 N/A N/A N/A N/A N/A 2.675±0.00 N/A 3.174±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NE CIL_0002NE_0001 CGP 22:35257452-35347994
CIL_00099W CIL_00099W_0001 VISTA 22:35286634-35891311
CIL_0002NF CIL_0002NF_0001 CGP 22:35299275-35394214

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005829 IDA cytosol
GO:0006886 IEA intracellular protein transport
GO:0006897 NAS endocytosis
GO:0015031 NAS protein transport
GO:0016020 IDA membrane
GO:0016197 TAS endosomal transport
GO:0030276 IDA clathrin binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043638 tom1 target of myb1 (chicken) protein_coding Danio_rerio
ENSMUSG00000037827 Gm5884 predicted pseudogene 5884 protein_coding Mus_musculus
ENSMUSG00000042870 Tom1 target of myb1 homolog (chicken) protein_coding Mus_musculus

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