C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: target of myb1 (chicken)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449058 TOM1-001 ENSG00000100284 9606 + 22:35299804-35347994 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000449058
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000449058 6.424±0.00 0.563±0.00 7.185±6.37 6.217±1.03 8.062±6.23 10.120±6.32 74.424±62.50 9.023±4.64 21.129±7.88 10.760±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NE CIL_0002NE_0001 CGP 22:35257452-35347994
CIL_00099W CIL_00099W_0001 VISTA 22:35286634-35891311
CIL_0002NF CIL_0002NF_0001 CGP 22:35299275-35394214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005829 IDA cytosol
GO:0006886 IEA intracellular protein transport
GO:0006897 NAS endocytosis
GO:0015031 NAS protein transport
GO:0016020 IDA membrane
GO:0016197 TAS endosomal transport
GO:0030276 IDA clathrin binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165630 Tom1-202 protein_coding Mus_musculus 0 1731
ENSMUST00000036712 Gm5884-201 protein_coding Mus_musculus 0 1725
ENSMUST00000078847 Tom1-201 protein_coding Mus_musculus 0 1199
ENSMUST00000095254 Tom1l2-201 protein_coding Mus_musculus 0 252
ENSMUST00000142225 Tom1l2-007 processed_transcript Mus_musculus 0 252
ENSMUST00000102682 Tom1l2-003 protein_coding Mus_musculus 0 252
ENSMUST00000064019 Tom1l2-005 protein_coding Mus_musculus 0 252
ENSMUST00000102683 Tom1l2-002 protein_coding Mus_musculus 0 252
ENSMUST00000093048 Tom1l2-008 protein_coding Mus_musculus 0 209
ENSMUST00000093046 Tom1l2-009 protein_coding Mus_musculus 1e-35 156

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