C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cochlin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100473 COCH 9606 + 14:30874514-30895065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216361 COCH-006 30874543-30890139 protein_coding
  ENST00000396618 COCH-005 30874559-30890618 protein_coding
  ENST00000460581 COCH-007 30874764-30890616 protein_coding
  ENST00000468826 COCH-008 30880587-30890616 protein_coding
  ENST00000475087 COCH-003 30874572-30895065 protein_coding
  ENST00000553772 COCH-010 30874559-30884618 nonsense_mediated_decay
  ENST00000553833 COCH-013 30877336-30880496 retained_intron
  ENST00000555117 COCH-009 30874514-30875215 retained_intron
  ENST00000555881 COCH-011 30874763-30885620 protein_coding
  ENST00000556908 COCH-012 30874745-30880734 protein_coding
  ENST00000557065 COCH-014 30877574-30885532 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENST00000216361
Transcript ID Adrenal
ENST00000216361 4.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0002 UCNEbase 14:30606668-30894124
CIL_0003T0 CIL_0003T0_0001 CGP 14:30622112-30895065
CIL_0004EI CIL_0004EI_0001 CGP 14:30874514-31026401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007605 IEA sensory perception of sound
GO:0008360 IMP regulation of cell shape
GO:0042742 IEA defense response to bacterium
GO:0045089 IEA positive regulation of innate immune response
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024032 coch coagulation factor C homolog, cochlin (Limulus polyphemus) protein_coding Danio_rerio
ENSMUSG00000020953 Coch coagulation factor C homolog (Limulus polyphemus) protein_coding Mus_musculus

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