C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coagulation factor C homolog (Limulus polyphemus)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020953 Coch 10090 + 12:51593341-51605773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085412 Coch-201 51593341-51605773 protein_coding
  ENSMUST00000164782 Coch-202 51593341-51605773 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085412ENSMUST00000164782
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085412 0.994±0.72 0.494±0.17 0.332±0.01 1.722±1.25 1.080±0.33 0.267±0.06 0.092±0.01 1.602±0.17 0.053±0.03 0.084±0.03 0.161±0.09 14.058±7.02 3.802±5.66 0.110±0.06
ENSMUST00000164782 0.552±0.19 0.206±0.07 0.090±0.00 0.906±0.23 0.244±0.04 0.227±0.08 0.160±0.02 0.402±0.19 0.033±0.02 0.076±0.00 N/A 11.115±3.85 0.097±0.00 0.089±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860
CIL_0003T0 CIL_0003T0_0002 CGP 12:51377580-51605773
CIL_0004EI CIL_0004EI_0002 CGP 12:51593341-51691914

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IMP extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0007605 IMP sensory perception of sound
GO:0008360 ISS regulation of cell shape
GO:0042742 IMP defense response to bacterium
GO:0045089 IMP positive regulation of innate immune response
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024032 coch coagulation factor C homolog, cochlin (Limulus polyphemus) protein_coding Danio_rerio
ENSG00000100473 COCH cochlin protein_coding Homo_sapiens

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