C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003T0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000092108-ENSG00000100473 CGP 9606 14:30622112-30895065
GeneTranscriptPositionBiotype
ENSG00000092108 (SCFD1)
sec1 family domain containing 1 		ENST00000311943 (SCFD1-009) 30622327-30735772 nonsense_mediated_decay
ENST00000396629 (SCFD1-010) 30622332-30735791 protein_coding
ENST00000458591 (SCFD1-006) 30622112-30735812 protein_coding
ENST00000463622 (SCFD1-008) 30622319-30735692 nonsense_mediated_decay
ENST00000469043 (SCFD1-001) 30639777-30658358 protein_coding
ENST00000484733 (SCFD1-002) 30622319-30735799 nonsense_mediated_decay
ENST00000544052 (SCFD1-004) 30622319-30735789 protein_coding
ENST00000553278 (SCFD1-018) 30669763-30673994 retained_intron
ENST00000553280 (SCFD1-025) 30734494-30735794 retained_intron
ENST00000553693 (SCFD1-015) 30622329-30650626 protein_coding
ENST00000554437 (SCFD1-022) 30705824-30735799 nonsense_mediated_decay
ENST00000554486 (SCFD1-019) 30676126-30705885 processed_transcript
ENST00000554776 (SCFD1-026) 30628209-30653588 nonsense_mediated_decay
ENST00000554819 (SCFD1-017) 30652338-30694858 processed_transcript
ENST00000555259 (SCFD1-005) 30622311-30715970 nonsense_mediated_decay
ENST00000555550 (SCFD1-023) 30721726-30722842 retained_intron
ENST00000555953 (SCFD1-021) 30673273-30675331 retained_intron
ENST00000556256 (SCFD1-024) 30721702-30735662 retained_intron
ENST00000556413 (SCFD1-016) 30628209-30630917 retained_intron
ENST00000556486 (SCFD1-012) 30715298-30735657 retained_intron
ENST00000556534 (SCFD1-020) 30638197-30653981 retained_intron
ENST00000556768 (SCFD1-007) 30622319-30735791 nonsense_mediated_decay
ENST00000557076 (SCFD1-014) 30622328-30649583 protein_coding
ENST00000557713 (SCFD1-013) 30622320-30638173 nonsense_mediated_decay
ENSG00000100473 (COCH)
cochlin 		ENST00000216361 (COCH-006) 30874543-30890139 protein_coding
ENST00000396618 (COCH-005) 30874559-30890618 protein_coding
ENST00000460581 (COCH-007) 30874764-30890616 protein_coding
ENST00000468826 (COCH-008) 30880587-30890616 protein_coding
ENST00000475087 (COCH-003) 30874572-30895065 protein_coding
ENST00000553772 (COCH-010) 30874559-30884618 nonsense_mediated_decay
ENST00000553833 (COCH-013) 30877336-30880496 retained_intron
ENST00000555117 (COCH-009) 30874514-30875215 retained_intron
ENST00000555881 (COCH-011) 30874763-30885620 protein_coding
ENST00000556908 (COCH-012) 30874745-30880734 protein_coding
ENST00000557065 (COCH-014) 30877574-30885532 nonsense_mediated_decay
ENSG00000196792 (STRN3)
striatin, calmodulin binding protein 3 		ENST00000355683 (STRN3-001) 30893799-31026401 protein_coding
ENST00000357479 (STRN3-002) 30895203-31026382 protein_coding
ENST00000366206 (STRN3-007) 30912066-30932398 processed_transcript
ENST00000554124 (STRN3-008) 30905417-30912311 retained_intron
ENST00000554991 (STRN3-005) 30913524-30935304 protein_coding
ENST00000555152 (STRN3-006) 30947112-30964509 protein_coding
ENST00000555358 (STRN3-003) 30895345-31026319 nonsense_mediated_decay
ENST00000556577 (STRN3-004) 30913524-30936621 protein_coding
ENSG00000213867 (RP11-829H16.2)
 ENST00000468034 (RP11-829H16.2-001) 30821419-30821843 processed_pseudogene
ENSG00000243855 (RP11-114O13.1)
 ENST00000475149 (RP11-114O13.1-001) 30791098-30791489 processed_pseudogene
ENSG00000258558 (RP11-159L20.2)
 ENST00000554665 (RP11-159L20.2-001) 30734926-30822702 antisense
ENSG00000258648 (UBE2CP1)
ubiquitin-conjugating enzyme E2C pseudogene 1 		ENST00000557130 (UBE2CP1-001) 30683045-30683598 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003T0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020952-ENSMUSG00000020953 CGP 10090 12:51377580-51605773
GeneTranscriptPositionBiotype
ENSMUSG00000020952 (Scfd1)
Sec1 family domain containing 1 		ENSMUST00000021335 (Scfd1-201) 51377580-51450096 protein_coding
ENSMUSG00000020953 (Coch)
coagulation factor C homolog (Limulus polyphemus) 		ENSMUST00000085412 (Coch-201) 51593341-51605773 protein_coding
ENSMUST00000164782 (Coch-202) 51593341-51605773 protein_coding

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003T0_0001ENSG00000092108ENST00000311943ENST00000458591ENST00000463622ENST00000544052ENST00000554437ENST00000554776ENST00000554819ENST00000556768ENSG00000100473ENST00000216361ENSG00000196792ENST00000355683ENST00000357479ENST00000555358ENST00000556577ENSG00000213867ENST00000468034ENSG00000243855ENST00000475149ENSG00000258558ENST00000554665ENSG00000258648ENST00000557130CIL_0003T0_0002ENSMUSG00000020952ENSMUST00000021335ENSMUSG00000020953ENSMUST00000085412ENSMUST00000164782
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092108 ENST00000311943 N/A N/A 0.762±0.00 N/A 2.806±0.00 1.740±0.00 1.940±0.43 6.056±0.00 3.891±0.00 2.796±0.19 N/A 7.798±0.19 4.134±0.00 4.274±0.68
ENST00000396629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458591 N/A N/A N/A 2.203±0.00 10.322±0.00 4.344±0.00 2.630±0.00 1.403±0.00 3.673±0.00 3.276±0.00 N/A 6.320±2.52 2.355±0.00 N/A
ENST00000463622 1.349±0.00 3.420±0.00 N/A 4.570±0.00 2.775±0.00 N/A 1.732±0.00 N/A N/A 1.301±0.00 2.297±0.00 N/A N/A N/A
ENST00000469043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544052 4.521±0.00 4.597±0.00 2.103±0.00 2.944±1.12 5.325±0.00 4.456±1.71 4.993±0.00 4.413±2.27 5.890±0.00 3.035±0.19 2.868±0.00 7.367±1.95 4.635±2.20 4.829±1.92
ENST00000553278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554437 N/A N/A N/A N/A N/A N/A N/A N/A 4.472±0.00 N/A N/A 13.401±2.73 6.587±0.00 9.335±1.56
ENST00000554486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.076±0.00 N/A N/A N/A
ENST00000554819 N/A N/A N/A N/A N/A N/A N/A 4.514±0.00 N/A N/A 1.349±0.00 15.324±0.00 6.790±0.00 12.582±0.00
ENST00000555259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556768 2.784±0.00 5.463±0.00 N/A N/A 4.943±0.00 1.745±0.00 N/A 3.383±0.00 4.080±0.00 1.594±0.00 2.411±0.90 5.120±0.00 3.708±0.00 4.374±0.00
ENST00000557076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100473 ENST00000216361 N/A 4.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196792 ENST00000355683 7.924±0.00 5.694±0.00 1.773±0.00 3.216±0.31 5.137±2.46 7.054±2.08 5.132±2.61 5.099±1.88 5.084±1.32 4.346±1.72 13.093±10.87 8.133±3.92 3.239±1.68 12.432±3.53
ENST00000357479 N/A N/A N/A 2.284±0.19 2.205±0.47 N/A N/A 2.083±0.00 N/A N/A N/A 4.375±1.55 N/A 8.684±0.00
ENST00000366206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555358 N/A N/A 1.184±0.00 N/A N/A N/A 1.474±0.00 N/A 14.298±0.00 N/A N/A 5.960±0.00 2.806±0.00 N/A
ENST00000556577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.841±0.00
ENSG00000213867 ENST00000468034 0.034±0.00 0.106±0.00 N/A N/A N/A N/A 0.031±0.00 N/A N/A 0.556±0.52 N/A N/A N/A 0.106±0.04
ENSG00000243855 ENST00000475149 N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258558 ENST00000554665 N/A 0.069±0.00 N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A 0.228±0.05 N/A N/A
ENSG00000258648 ENST00000557130 0.059±0.00 0.401±0.00 1.585±0.00 0.171±0.00 0.162±0.00 0.646±0.00 0.197±0.00 1.913±0.00 1.426±0.00 N/A N/A 1.008±1.39 N/A 0.266±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020952 ENSMUST00000021335 9.837±0.76 3.027±0.49 16.135±1.63 11.437±1.09 5.885±1.89 3.475±0.53 4.584±0.45 5.616±1.55 11.708±6.09 5.362±1.39 3.690±0.44 7.316±6.83 21.973±4.65 5.462±1.33
ENSMUSG00000020953 ENSMUST00000085412 0.994±0.72 0.494±0.17 0.332±0.01 1.722±1.25 1.080±0.33 0.267±0.06 0.092±0.01 1.602±0.17 0.053±0.03 0.084±0.03 0.161±0.09 14.058±7.02 3.802±5.66 0.110±0.06
ENSMUST00000164782 0.552±0.19 0.206±0.07 0.090±0.00 0.906±0.23 0.244±0.04 0.227±0.08 0.160±0.02 0.402±0.19 0.033±0.02 0.076±0.00 N/A 11.115±3.85 0.097±0.00 0.089±0.03

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