C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: breast cancer metastasis-suppressor 1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100916 BRMS1L 9606 + 14:35826318-35932325 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216807 BRMS1L-001 35826318-35871963 protein_coding
  ENST00000547420 BRMS1L-004 35826446-35858681 nonsense_mediated_decay
  ENST00000548758 BRMS1L-003 35826457-35866051 retained_intron
  ENST00000551774 BRMS1L-006 35833001-35932325 protein_coding
  ENST00000552677 BRMS1L-002 35826441-35870860 nonsense_mediated_decay
  ENST00000552849 BRMS1L-005 35867777-35870393 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216807ENST00000548758ENST00000551774ENST00000552677
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216807 1.501±0.00 2.693±0.00 0.856±0.00 4.849±1.27 2.326±0.00 1.736±1.04 2.604±2.03 2.247±1.55 1.446±0.34 1.021±0.66 1.309±1.22 2.842±0.57 2.157±0.54 3.332±1.83
ENST00000548758 N/A N/A 0.448±0.00 N/A N/A 0.636±0.00 N/A N/A 1.091±0.00 0.576±0.00 0.656±0.00 N/A N/A 1.994±0.00
ENST00000551774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.416±0.00 4.668±0.00
ENST00000552677 N/A N/A N/A N/A 0.519±0.00 N/A 0.361±0.00 N/A N/A N/A N/A 1.760±0.00 N/A 1.598±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460
CIL_0007LS CIL_0007LS_0001 UCNEbase 14:35509773-36362792
CIL_00045N CIL_00045N_0001 CGP 14:35538352-35932325
CIL_0007WQ CIL_0007WQ_0001 VISTA 14:35812479-36414628
CIL_00045M CIL_00045M_0001 CGP 14:35826318-36320676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0040008 IEA regulation of growth

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006235 brms1la breast cancer metastasis-suppressor 1-like a protein_coding Danio_rerio
ENSDARG00000018047 brms1lb breast cancer metastasis-suppressor 1-like b protein_coding Danio_rerio
ENSMUSG00000012076 Brms1l breast cancer metastasis-suppressor 1-like protein_coding Mus_musculus

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