C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pinin, desmosome associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100941 PNN 9606 + 14:39175183-39183218 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216832 PNN-001 39175213-39183218 protein_coding
  ENST00000553331 PNN-004 39175183-39179246 protein_coding
  ENST00000554117 PNN-002 39175282-39176590 retained_intron
  ENST00000554902 PNN-006 39179002-39180701 retained_intron
  ENST00000556530 PNN-003 39175230-39177708 protein_coding
  ENST00000557680 PNN-005 39179090-39182750 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216832ENST00000553331ENST00000554902
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216832 11.899±0.00 25.244±0.00 2.145±0.00 9.045±7.27 7.510±3.66 10.845±7.22 2.838±2.61 9.108±5.93 5.218±0.98 6.640±5.69 7.766±0.00 28.763±25.00 13.468±8.33 40.110±18.55
ENST00000553331 N/A N/A N/A N/A N/A N/A 0.510±0.00 N/A N/A N/A 3.318±0.00 N/A N/A N/A
ENST00000554902 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.951±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VY CIL_0003VY_0001 CGP 14:39147811-39183218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0005198 NAS structural molecule activity
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005882 TAS intermediate filament
GO:0005886 TAS plasma membrane
GO:0005911 TAS cell-cell junction
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007155 TAS cell adhesion
GO:0016020 IDA membrane
GO:0016607 IEA nuclear speck
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015851 pnn pinin, desmosome associated protein protein_coding Danio_rerio
ENSMUSG00000020994 Pnn pinin protein_coding Mus_musculus

Loading