C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pinin, desmosome associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216832 PNN-001 ENSG00000100941 9606 + 14:39175213-39183218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216832 11.899±0.00 25.244±0.00 2.145±0.00 9.045±7.27 7.510±3.66 10.845±7.22 2.838±2.61 9.108±5.93 5.218±0.98 6.640±5.69 7.766±0.00 28.763±25.00 13.468±8.33 40.110±18.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VY CIL_0003VY_0001 CGP 14:39147811-39183218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0005198 NAS structural molecule activity
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005882 TAS intermediate filament
GO:0005886 TAS plasma membrane
GO:0005911 TAS cell-cell junction
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007155 TAS cell adhesion
GO:0016020 IDA membrane
GO:0016607 IEA nuclear speck
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021381 Pnn-201 protein_coding Mus_musculus 0 3823

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