C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182400-ENSG00000100941 CGP 9606 14:39147811-39183218
GeneTranscriptPositionBiotype
ENSG00000100941 (PNN)
pinin, desmosome associated protein 		ENST00000216832 (PNN-001) 39175213-39183218 protein_coding
ENST00000553331 (PNN-004) 39175183-39179246 protein_coding
ENST00000554117 (PNN-002) 39175282-39176590 retained_intron
ENST00000554902 (PNN-006) 39179002-39180701 retained_intron
ENST00000556530 (PNN-003) 39175230-39177708 protein_coding
ENST00000557680 (PNN-005) 39179090-39182750 processed_transcript
ENSG00000182400 (TRAPPC6B)
trafficking protein particle complex 6B 		ENST00000330149 (TRAPPC6B-002) 39147812-39170322 protein_coding
ENST00000347691 (TRAPPC6B-001) 39147812-39170393 protein_coding
ENST00000469361 (TRAPPC6B-003) 39147811-39170532 retained_intron
ENST00000554018 (TRAPPC6B-006) 39151797-39170329 protein_coding
ENST00000555269 (TRAPPC6B-007) 39150118-39170353 nonsense_mediated_decay
ENST00000556765 (TRAPPC6B-005) 39151811-39170430 nonsense_mediated_decay
ENST00000557764 (TRAPPC6B-004) 39149990-39170314 processed_transcript
ENSG00000241984 (RPL7AP2)
ribosomal protein L7a pseudogene 2 		ENST00000496515 (RPL7AP2-001) 39156742-39157852 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003VY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020993-ENSMUSG00000020994 CGP 10090 12:59043093-59074017
GeneTranscriptPositionBiotype
ENSMUSG00000020993 (Trappc6b)
trafficking protein particle complex 6B 		ENSMUST00000021380 (Trappc6b-201) 59043093-59061461 protein_coding
ENSMUSG00000020994 (Pnn)
pinin 		ENSMUST00000021381 (Pnn-201) 59066919-59074017 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VY_0001ENSG00000100941ENST00000216832ENST00000553331ENST00000554117ENST00000554902ENST00000556530ENST00000557680ENSG00000182400ENST00000330149ENST00000347691ENST00000469361ENST00000554018ENST00000555269ENST00000556765ENST00000557764ENSG00000241984ENST00000496515CIL_0003VY_0002ENSMUSG00000020993ENSMUST00000021380ENSMUSG00000020994ENSMUST00000021381
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VY_0001ENSG00000100941ENST00000216832ENST00000553331ENST00000554902ENSG00000182400ENST00000330149ENST00000347691ENST00000469361ENST00000555269ENST00000556765ENSG00000241984ENST00000496515CIL_0003VY_0002ENSMUSG00000020993ENSMUST00000021380ENSMUSG00000020994ENSMUST00000021381
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100941 ENST00000216832 11.899±0.00 25.244±0.00 2.145±0.00 9.045±7.27 7.510±3.66 10.845±7.22 2.838±2.61 9.108±5.93 5.218±0.98 6.640±5.69 7.766±0.00 28.763±25.00 13.468±8.33 40.110±18.55
ENST00000553331 N/A N/A N/A N/A N/A N/A 0.510±0.00 N/A N/A N/A 3.318±0.00 N/A N/A N/A
ENST00000554117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554902 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.951±0.00 N/A N/A N/A N/A
ENST00000556530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182400 ENST00000330149 4.635±0.00 3.663±0.00 N/A 11.800±1.48 3.913±1.75 2.191±1.20 3.382±0.60 2.229±1.32 3.834±1.29 2.788±0.37 2.023±0.99 5.408±2.43 4.170±2.55 10.472±2.83
ENST00000347691 0.932±0.00 N/A 1.887±0.00 N/A 2.810±0.00 1.525±0.97 N/A 2.439±0.47 N/A 2.295±0.93 0.343±0.00 1.313±0.26 0.657±0.19 N/A
ENST00000469361 N/A 0.422±0.00 1.657±0.00 N/A 0.595±0.00 N/A N/A 0.371±0.00 N/A N/A N/A 0.802±0.00 N/A N/A
ENST00000554018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.415±0.00
ENST00000556765 N/A N/A N/A 13.605±0.00 N/A 4.379±0.00 4.642±0.00 N/A 11.127±0.00 7.099±0.00 2.175±0.00 6.525±0.00 N/A N/A
ENST00000557764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241984 ENST00000496515 0.088±0.00 0.117±0.00 0.247±0.00 0.205±0.00 0.098±0.00 0.068±0.00 0.108±0.00 0.096±0.00 N/A 0.023±0.00 N/A 0.063±0.02 0.077±0.00 0.099±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020993 ENSMUST00000021380 37.483±15.05 105.388±77.02 44.222±6.90 43.014±9.29 25.346±11.68 45.176±18.10 19.828±3.69 36.958±5.37 23.732±8.85 49.980±37.96 21.359±0.91 43.416±17.31 39.454±8.77 32.078±4.76
ENSMUSG00000020994 ENSMUST00000021381 11.360±4.10 13.413±5.92 25.669±0.94 32.375±6.39 8.950±2.97 17.637±2.04 5.324±0.95 8.651±1.10 22.221±14.45 18.812±0.45 8.139±0.45 31.907±11.62 28.530±12.53 14.366±3.02

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