C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDX1 C-terminal inhibiting factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100982 PCIF1 9606 + 20:45934628-45948023 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372409 PCIF1-001 45934628-45948023 protein_coding
  ENST00000479348 PCIF1-002 45945007-45948023 protein_coding
  ENST00000616084 PCIF1-003 45934733-45937972 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372409ENST00000479348ENST00000616084
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372409 15.841±0.00 23.278±0.00 8.675±7.29 7.809±6.33 6.567±6.18 6.240±0.00 6.785±6.29 2.699±1.88 11.611±10.36 15.243±13.76 24.494±13.77 15.183±6.24 10.991±6.92
ENST00000479348 N/A 8.027±0.00 N/A N/A N/A 0.584±0.00 N/A 1.825±0.00 N/A 1.822±0.00 6.887±0.00 N/A 2.549±0.00
ENST00000616084 N/A N/A N/A N/A 0.899±0.00 N/A N/A N/A N/A 3.366±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IV CIL_0006IV_0002 CGP 20:45898621-45948023
CIL_0006GO CIL_0006GO_0001 CGP 20:45934628-45972172

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0010923 IDA negative regulation of phosphatase activity
GO:0015630 IDA microtubule cytoskeleton
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004917 pcif1 PDX1 C-terminal inhibiting factor 1 protein_coding Danio_rerio
ENSMUSG00000039849 Pcif1 PDX1 C-terminal inhibiting factor 1 protein_coding Mus_musculus

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