C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006IV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035768-ENSDARG00000004917 CGP 7955 6:55579791-55650741
GeneTranscriptPositionBiotype
ENSDARG00000004917 (pcif1)
PDX1 C-terminal inhibiting factor 1 		ENSDART00000009197 (pcif1-201) 55623993-55650741 protein_coding
ENSDART00000051904 (pcif1-001) 55617605-55639149 protein_coding
ENSDARG00000035768 (pltp)
phospholipid transfer protein 		ENSDART00000051901 (pltp-201) 55579791-55605975 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006IV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100979-ENSG00000100982 CGP 9606 20:45898621-45948023
GeneTranscriptPositionBiotype
ENSG00000064601 (CTSA)
cathepsin A 		ENST00000191018 (CTSA-004) 45891341-45898820 protein_coding
ENST00000354880 (CTSA-006) 45891322-45898820 protein_coding
ENST00000372459 (CTSA-012) 45891376-45898786 protein_coding
ENST00000372484 (CTSA-001) 45891044-45898820 protein_coding
ENST00000419493 (CTSA-020) 45892752-45895132 protein_coding
ENST00000480961 (CTSA-009) 45893988-45895250 retained_intron
ENST00000484855 (CTSA-010) 45896381-45898820 retained_intron
ENST00000485627 (CTSA-007) 45892306-45894329 retained_intron
ENST00000493522 (CTSA-008) 45892961-45897794 retained_intron
ENST00000606000 (CTSA-022) 45897626-45898627 retained_intron
ENST00000606066 (CTSA-014) 45891335-45892764 retained_intron
ENST00000606394 (CTSA-018) 45891313-45893299 nonsense_mediated_decay
ENST00000606782 (CTSA-019) 45892408-45893229 retained_intron
ENST00000606788 (CTSA-023) 45890144-45898820 nonsense_mediated_decay
ENST00000607187 (CTSA-021) 45896599-45897783 retained_intron
ENST00000607212 (CTSA-017) 45891357-45892454 retained_intron
ENST00000607482 (CTSA-016) 45891376-45892295 protein_coding
ENST00000607814 (CTSA-015) 45891355-45892372 retained_intron
ENST00000607841 (CTSA-013) 45891335-45892247 retained_intron
ENSG00000100979 (PLTP)
phospholipid transfer protein 		ENST00000354050 (PLTP-003) 45898621-45912152 protein_coding
ENST00000372420 (PLTP-002) 45898760-45910937 protein_coding
ENST00000372431 (PLTP-001) 45898760-45912147 protein_coding
ENST00000420868 (PLTP-004) 45898806-45912155 protein_coding
ENST00000477313 (PLTP-005) 45898763-45912047 protein_coding
ENSG00000100982 (PCIF1)
PDX1 C-terminal inhibiting factor 1 		ENST00000372409 (PCIF1-001) 45934628-45948023 protein_coding
ENST00000479348 (PCIF1-002) 45945007-45948023 protein_coding
ENST00000616084 (PCIF1-003) 45934733-45937972 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0006IV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017754-ENSMUSG00000039849 CGP 10090 2:164839518-164894454
GeneTranscriptPositionBiotype
ENSMUSG00000017754 (Pltp)
phospholipid transfer protein 		ENSMUST00000059954 (Pltp-001) 164839518-164857711 protein_coding
ENSMUST00000109316 (Pltp-003) 164839518-164857542 protein_coding
ENSMUST00000109317 (Pltp-002) 164839518-164857633 protein_coding
ENSMUST00000128110 (Pltp-006) 164854310-164857630 protein_coding
ENSMUST00000142603 (Pltp-007) 164846813-164856796 retained_intron
ENSMUST00000148912 (Pltp-004) 164852473-164857626 processed_transcript
ENSMUST00000156255 (Pltp-005) 164852610-164857620 protein_coding
ENSMUSG00000039834 (Zfp335)
zinc finger protein 335 		ENSMUST00000041361 (Zfp335-001) 164891882-164911757 protein_coding
ENSMUST00000139247 (Zfp335-004) 164902520-164907665 nonsense_mediated_decay
ENSMUST00000183830 (Zfp335-003) 164891882-164911757 nonsense_mediated_decay
ENSMUSG00000039849 (Pcif1)
PDX1 C-terminal inhibiting factor 1 		ENSMUST00000041643 (Pcif1-001) 164879365-164894454 protein_coding
ENSMUST00000122810 (Pcif1-004) 164880052-164883110 retained_intron
ENSMUST00000130213 (Pcif1-003) 164883933-164884694 retained_intron
ENSMUST00000145327 (Pcif1-002) 164879304-164883199 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006IV_0001ENSDARG00000004917ENSDART00000009197ENSDART00000051904ENSDARG00000035768ENSDART00000051901CIL_0006IV_0002ENSG00000064601ENST00000191018ENST00000354880ENST00000372459ENST00000372484ENST00000419493ENST00000480961ENST00000484855ENST00000485627ENST00000493522ENST00000606000ENST00000606066ENST00000606394ENST00000606782ENST00000606788ENST00000607187ENST00000607212ENST00000607482ENST00000607814ENST00000607841ENSG00000100979ENST00000354050ENST00000372420ENST00000372431ENST00000420868ENST00000477313ENSG00000100982ENST00000372409ENST00000479348ENST00000616084CIL_0006IV_0003ENSMUSG00000017754ENSMUST00000059954ENSMUST00000109316ENSMUST00000109317ENSMUST00000128110ENSMUST00000142603ENSMUST00000148912ENSMUST00000156255ENSMUSG00000039834ENSMUST00000041361ENSMUST00000139247ENSMUST00000183830ENSMUSG00000039849ENSMUST00000041643ENSMUST00000122810ENSMUST00000130213ENSMUST00000145327
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006IV_0001ENSDARG00000004917ENSDART00000009197ENSDART00000051904ENSDARG00000035768ENSDART00000051901CIL_0006IV_0002ENSG00000064601ENST00000191018ENST00000354880ENST00000372459ENST00000372484ENST00000480961ENST00000493522ENSG00000100979ENST00000354050ENST00000372420ENST00000372431ENSG00000100982ENST00000372409ENST00000479348ENST00000616084CIL_0006IV_0003ENSMUSG00000017754ENSMUST00000059954ENSMUST00000109317ENSMUSG00000039834ENSMUST00000041361ENSMUSG00000039849ENSMUST00000041643ENSMUST00000145327
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004917 ENSDART00000009197 N/A N/A N/A 2.413±0.38 N/A N/A 2.542±1.38 3.901±1.77 0.037±0.00 N/A 0.881±0.00 N/A N/A N/A
ENSDART00000051904 N/A N/A N/A N/A N/A N/A 0.571±0.25 0.173±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000035768 ENSDART00000051901 N/A N/A N/A 14.128±10.26 N/A N/A 0.992±0.14 2.553±0.00 0.188±0.00 N/A 1.438±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064601 ENST00000191018 N/A N/A 7.110±0.00 2.621±0.00 6.610±0.00 N/A 1.723±0.00 4.074±0.00 2.343±0.00 3.544±0.00 N/A 47.113±41.81 103.242±16.51 N/A
ENST00000354880 N/A N/A N/A 25.859±0.00 26.821±0.00 16.668±0.00 N/A N/A 16.503±0.00 N/A 2.884±0.00 N/A 79.138±0.00 11.214±0.00
ENST00000372459 N/A N/A N/A N/A 33.525±0.00 17.093±0.00 34.142±0.00 98.454±0.00 34.843±0.00 40.149±0.00 31.219±0.00 54.155±15.39 N/A N/A
ENST00000372484 N/A N/A N/A N/A N/A 4.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480961 N/A N/A 54.075±0.00 21.322±0.00 45.828±0.00 34.727±0.00 6.814±0.00 29.742±0.00 N/A 17.132±0.00 20.567±0.00 25.734±0.00 N/A N/A
ENST00000484855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493522 N/A N/A 15.311±0.00 7.605±0.00 N/A 7.631±0.00 N/A 5.339±0.00 N/A N/A N/A 10.811±0.00 N/A N/A
ENST00000606000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100979 ENST00000354050 N/A N/A N/A N/A 34.093±0.00 18.914±0.00 30.584±0.00 77.130±0.00 37.051±0.00 45.841±0.00 23.196±0.00 54.383±14.50 135.340±17.72 26.762±0.00
ENST00000372420 N/A N/A N/A N/A N/A N/A 1.615±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000372431 408.786±0.00 265.372±0.00 N/A 33.685±27.86 65.704±46.53 29.014±23.77 25.082±22.74 31.602±28.20 17.714±8.72 43.102±35.87 16.636±13.93 98.466±70.03 303.513±51.08 91.125±74.74
ENST00000420868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100982 ENST00000372409 15.841±0.00 23.278±0.00 N/A 8.675±7.29 7.809±6.33 6.567±6.18 6.240±0.00 6.785±6.29 2.699±1.88 11.611±10.36 15.243±13.76 24.494±13.77 15.183±6.24 10.991±6.92
ENST00000479348 N/A 8.027±0.00 N/A N/A N/A N/A 0.584±0.00 N/A 1.825±0.00 N/A 1.822±0.00 6.887±0.00 N/A 2.549±0.00
ENST00000616084 N/A N/A N/A N/A N/A 0.899±0.00 N/A N/A N/A N/A 3.366±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017754 ENSMUST00000059954 178.076±3.52 27.001±3.66 119.289±13.33 26.853±0.69 117.470±26.79 31.497±3.06 24.621±5.28 N/A 28.478±9.96 338.773±14.40 7.993±0.73 61.407±11.63 66.682±21.63 8.916±1.71
ENSMUST00000109316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109317 N/A N/A N/A 17.884±3.28 59.214±7.04 N/A N/A N/A N/A 143.615±27.74 N/A 30.128±4.74 25.543±0.00 1.658±0.00
ENSMUST00000128110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039834 ENSMUST00000041361 9.240±1.85 13.643±3.29 6.387±1.73 12.093±6.08 14.039±5.30 15.345±0.46 3.041±1.10 8.444±1.13 7.183±2.00 11.910±2.09 3.520±0.77 14.192±4.98 9.458±7.80 4.140±1.29
ENSMUST00000139247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039849 ENSMUST00000041643 7.121±1.29 12.155±2.62 4.673±0.74 8.500±2.80 10.108±4.19 9.595±1.65 3.792±0.51 7.506±0.60 3.956±1.21 13.644±0.43 4.729±1.03 9.945±2.65 3.618±2.33 4.522±0.51
ENSMUST00000122810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145327 N/A 56.821±10.50 N/A N/A N/A N/A N/A N/A 12.255±0.00 N/A N/A N/A N/A N/A

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