C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prefoldin subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101132 PFDN4 9606 + 20:54207847-54228052 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371419 PFDN4-001 54207847-54219953 protein_coding
  ENST00000441080 PFDN4-005 54208095-54228052 nonsense_mediated_decay
  ENST00000474326 PFDN4-004 54208428-54214410 processed_transcript
  ENST00000487129 PFDN4-002 54208312-54219203 processed_transcript
  ENST00000493356 PFDN4-003 54208300-54219285 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371419ENST00000441080ENST00000474326ENST00000487129ENST00000493356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371419 N/A N/A N/A 4.366±0.00 0.902±0.00 0.839±0.44 1.308±0.03 0.787±0.15 0.523±0.18 0.622±0.26 0.277±0.06 1.543±0.87 1.748±1.05 2.970±0.32
ENST00000441080 3.223±0.00 10.409±0.00 0.920±0.00 9.632±4.62 4.172±0.75 8.114±5.29 2.193±0.00 1.567±0.35 5.748±0.00 2.389±0.00 1.073±0.30 14.160±3.57 9.402±0.74 N/A
ENST00000474326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 49.001±0.00
ENST00000487129 N/A N/A N/A N/A 5.851±0.00 N/A 2.097±0.00 N/A N/A N/A N/A N/A N/A 6.385±0.00
ENST00000493356 8.390±0.00 5.036±0.00 N/A 9.982±0.00 4.522±0.00 7.504±0.00 6.500±0.00 5.073±0.00 2.180±0.00 0.964±0.00 2.154±1.79 10.358±6.29 7.677±2.64 10.567±2.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HH CIL_0001HH_0001 CGP 20:54153449-54228052

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 NAS cytosol
GO:0006457 TAS:IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0044267 TAS cellular protein metabolic process
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051087 TAS chaperone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061228 pfdn4 prefoldin subunit 4 protein_coding Danio_rerio
ENSMUSG00000052033 Pfdn4 prefoldin 4 protein_coding Mus_musculus

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