C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101680 LAMA1 9606 - 18:6941744-7117814 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389658 LAMA1-001 6941744-7117814 protein_coding
  ENST00000484335 LAMA1-005 6965400-6972208 retained_intron
  ENST00000488064 LAMA1-002 6941889-6965956 retained_intron
  ENST00000488089 LAMA1-004 6953730-6960695 retained_intron
  ENST00000490190 LAMA1-006 6963885-6965547 retained_intron
  ENST00000492048 LAMA1-003 6941889-6956447 retained_intron
  ENST00000579014 LAMA1-007 6941948-7117759 retained_intron
  ENST00000585178 LAMA1-008 7038572-7040237 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389658ENST00000488064ENST00000488089ENST00000492048ENST00000579014ENST00000585178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389658 0.476±0.00 N/A N/A 0.136±0.00 0.253±0.00 0.648±0.00 N/A 0.776±0.76 N/A N/A N/A 0.743±0.05 0.132±0.08 1.421±0.14
ENST00000488064 N/A 0.371±0.00 N/A 0.285±0.00 0.306±0.00 0.485±0.00 N/A 2.536±0.00 0.062±0.00 N/A N/A N/A 1.343±0.00 3.096±0.00
ENST00000488089 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000492048 N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A 0.109±0.00 0.029±0.00 N/A N/A N/A
ENST00000579014 0.281±0.00 0.108±0.00 0.256±0.00 0.254±0.00 0.132±0.00 N/A 0.041±0.00 N/A 0.054±0.00 0.032±0.01 0.020±0.00 0.056±0.00 0.081±0.00 N/A
ENST00000585178 N/A N/A N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002011 IEA morphogenesis of an epithelial sheet
GO:0005102 IEA receptor binding
GO:0005201 ISS extracellular matrix structural constituent
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 ISS proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005606 IPI:IEA laminin-1 complex
GO:0005608 IPI laminin-3 complex
GO:0005615 IDA extracellular space
GO:0005911 IEA cell-cell junction
GO:0007155 IEA cell adhesion
GO:0007166 ISS cell surface receptor signaling pathway
GO:0007411 TAS axon guidance
GO:0009888 IEA tissue development
GO:0030155 IEA regulation of cell adhesion
GO:0030198 TAS extracellular matrix organization
GO:0030334 IEA regulation of cell migration
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0043208 IEA glycosphingolipid binding
GO:0043256 IEA laminin complex
GO:0045198 IEA establishment of epithelial cell apical/basal polarity
GO:0045995 IEA regulation of embryonic development
GO:0060041 IEA retina development in camera-type eye
GO:0060441 IEA epithelial tube branching involved in lung morphogenesis
GO:0060445 IEA branching involved in salivary gland morphogenesis
GO:0061304 IEA retinal blood vessel morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056043 lama1 laminin, alpha 1 protein_coding Danio_rerio
ENSMUSG00000032796 Lama1 laminin, alpha 1 protein_coding Mus_musculus

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