C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, epsilon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102287 GABRE 9606 - X:151953124-151974680 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370328 GABRE-001 151953124-151974679 protein_coding
  ENST00000417300 GABRE-012 151970057-151974664 nonsense_mediated_decay
  ENST00000441219 GABRE-005 151957283-151974680 nonsense_mediated_decay
  ENST00000462018 GABRE-010 151955397-151957512 processed_transcript
  ENST00000465405 GABRE-006 151969399-151970552 retained_intron
  ENST00000474932 GABRE-009 151961225-151969736 retained_intron
  ENST00000476016 GABRE-013 151958646-151962593 retained_intron
  ENST00000483564 GABRE-008 151953125-151956470 processed_transcript
  ENST00000486255 GABRE-007 151953125-151959723 retained_intron
  ENST00000489333 GABRE-015 151955104-151955835 retained_intron
  ENST00000491339 GABRE-011 151969852-151972660 retained_intron
  ENST00000495862 GABRE-014 151955053-151955913 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370328ENST00000441219ENST00000462018ENST00000465405ENST00000476016ENST00000483564ENST00000486255ENST00000489333ENST00000491339ENST00000495862
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370328 N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441219 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A
ENST00000462018 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.687±0.00 N/A N/A N/A
ENST00000465405 N/A N/A N/A N/A N/A N/A 0.793±0.00 N/A N/A N/A N/A N/A N/A
ENST00000476016 N/A N/A 0.404±0.00 3.175±0.00 N/A N/A N/A N/A N/A N/A 1.123±0.00 N/A N/A
ENST00000483564 6.465±0.00 1.990±0.00 0.210±0.00 7.291±0.00 1.013±0.00 1.401±0.00 0.898±0.00 0.341±0.00 2.420±0.00 0.016±0.00 1.294±0.30 3.666±0.65 0.939±0.04
ENST00000486255 N/A N/A N/A 2.058±0.70 0.228±0.00 0.367±0.00 N/A 0.405±0.24 0.260±0.00 N/A 0.460±0.14 1.126±0.71 0.084±0.00
ENST00000489333 N/A N/A 1.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491339 N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A 0.197±0.00 0.219±0.00 N/A N/A
ENST00000495862 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000118 CIL_000118_0001 CGP X:151912509-151974680

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007214 TAS gamma-aminobutyric acid signaling pathway
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031340 Gabre gamma-aminobutyric acid (GABA) A receptor, subunit epsilon protein_coding Mus_musculus

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