C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031340 Gabre 10090 - X:72255999-72274803 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064780 Gabre-001 72255999-72274803 protein_coding
  ENSMUST00000148499 Gabre-004 72261368-72269763 processed_transcript
  ENSMUST00000153740 Gabre-003 72268968-72274803 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064780ENSMUST00000153740
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064780 0.131±0.05 0.326±0.06 0.242±0.11 N/A 0.580±0.00 0.214±0.20 0.024±0.01 0.450±0.02 0.125±0.06 0.631±0.21 0.359±0.10 0.091±0.05
ENSMUST00000153740 N/A 0.277±0.03 N/A 0.146±0.02 N/A N/A 0.007±0.00 0.553±0.18 N/A 0.152±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000118 CIL_000118_0002 CGP X:72222017-72274803

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005887 ISS integral component of plasma membrane
GO:0006821 ISS chloride transport
GO:0007214 ISS gamma-aminobutyric acid signaling pathway
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000102287 GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon protein_coding Homo_sapiens

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