C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSC22 domain family, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102804 TSC22D1 9606 - 13:44432143-44577147 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261489 TSC22D1-002 44432143-44436845 protein_coding
  ENST00000437455 TSC22D1-007 44538722-44540033 processed_transcript
  ENST00000458659 TSC22D1-001 44433519-44576565 protein_coding
  ENST00000460842 TSC22D1-006 44538326-44573345 processed_transcript
  ENST00000472477 TSC22D1-009 44436504-44474250 protein_coding
  ENST00000486464 TSC22D1-005 44538326-44573522 nonsense_mediated_decay
  ENST00000487881 TSC22D1-003 44434709-44436596 processed_transcript
  ENST00000493016 TSC22D1-008 44575648-44577147 protein_coding
  ENST00000496314 TSC22D1-004 44434567-44435284 processed_transcript
  ENST00000496838 TSC22D1-010 44434716-44436426 retained_intron
  ENST00000501704 TSC22D1-201 44432143-44576565 protein_coding
  ENST00000611198 TSC22D1-202 44432143-44474301 protein_coding
  ENST00000622051 TSC22D1-203 44432143-44437254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261489ENST00000458659
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261489 N/A 8.142±0.00 22.894±0.00 20.193±8.38 9.607±1.16 2.594±0.00 3.656±0.00 10.733±0.00 10.660±0.00 N/A 16.228±8.02 21.742±14.13 14.634±0.00
ENST00000458659 3.867±0.00 6.155±0.00 33.715±0.00 5.420±0.01 9.288±2.69 7.194±5.79 8.710±7.15 N/A 5.689±0.00 40.302±0.00 8.731±1.91 10.753±3.83 31.289±15.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MH CIL_0006MH_0002 CGP 13:44373665-44577147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008284 IEA positive regulation of cell proliferation
GO:0043065 IEA positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038306 tsc22d1 TSC22 domain family, member 1 protein_coding Danio_rerio
ENSMUSG00000022010 Tsc22d1 TSC22 domain family, member 1 protein_coding Mus_musculus

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