C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centromere protein T
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102901 CENPT 9606 - 16:67828157-67847811 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000436104 CENPT-005 67828159-67833897 retained_intron
  ENST00000440851 CENPT-201 67828161-67835338 protein_coding
  ENST00000561593 CENPT-011 67832462-67847693 protein_coding
  ENST00000562338 CENPT-028 67831794-67833931 nonsense_mediated_decay
  ENST00000562462 CENPT-007 67830905-67833938 nonsense_mediated_decay
  ENST00000562483 CENPT-024 67831829-67833896 retained_intron
  ENST00000562513 CENPT-033 67828159-67833860 nonsense_mediated_decay
  ENST00000562787 CENPT-001 67828157-67847458 protein_coding
  ENST00000562947 CENPT-026 67830395-67832312 processed_transcript
  ENST00000563885 CENPT-009 67828187-67833880 retained_intron
  ENST00000564128 CENPT-003 67829949-67833946 retained_intron
  ENST00000564144 CENPT-016 67833974-67843305 processed_transcript
  ENST00000564346 CENPT-020 67833890-67843108 processed_transcript
  ENST00000564538 CENPT-029 67831586-67833860 processed_transcript
  ENST00000564817 CENPT-008 67828209-67833918 protein_coding
  ENST00000565114 CENPT-010 67832510-67847696 protein_coding
  ENST00000565132 CENPT-014 67833966-67846823 processed_transcript
  ENST00000565157 CENPT-006 67828159-67833897 retained_intron
  ENST00000565385 CENPT-018 67833945-67843129 processed_transcript
  ENST00000565436 CENPT-021 67835248-67841950 processed_transcript
  ENST00000565713 CENPT-025 67831216-67833943 nonsense_mediated_decay
  ENST00000566067 CENPT-030 67831769-67833943 nonsense_mediated_decay
  ENST00000566758 CENPT-027 67829945-67833885 protein_coding
  ENST00000567482 CENPT-017 67834025-67843290 processed_transcript
  ENST00000567985 CENPT-019 67833840-67843142 protein_coding
  ENST00000568069 CENPT-023 67831220-67833929 nonsense_mediated_decay
  ENST00000568495 CENPT-031 67828185-67830253 retained_intron
  ENST00000568564 CENPT-022 67832392-67834212 retained_intron
  ENST00000568652 CENPT-012 67833956-67847752 processed_transcript
  ENST00000568765 CENPT-032 67834034-67847811 processed_transcript
  ENST00000569019 CENPT-015 67834034-67843337 processed_transcript
  ENST00000569094 CENPT-013 67833889-67847755 processed_transcript
  ENST00000569862 CENPT-002 67828157-67833913 retained_intron
  ENST00000574569 CENPT-004 67828186-67829170 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000436104ENST00000563885ENST00000564817ENST00000565157ENST00000568495ENST00000569862
Transcript ID Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000436104 N/A N/A 0.756±0.00 N/A N/A 2.499±0.00 N/A N/A N/A
ENST00000563885 N/A N/A N/A 2.384±0.00 N/A N/A 11.429±0.00 N/A N/A
ENST00000564817 N/A N/A N/A N/A N/A 2.063±0.00 N/A N/A N/A
ENST00000565157 N/A N/A N/A N/A 1.247±0.00 8.912±0.00 22.004±0.00 N/A N/A
ENST00000568495 N/A 3.435±0.00 N/A N/A N/A N/A 10.826±0.00 10.438±0.00 59.961±0.00
ENST00000569862 0.976±0.00 1.349±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AB CIL_0005AB_0001 CGP 16:67723066-67832148
CIL_0003XE CIL_0003XE_0001 CGP 16:67806765-67847811
CIL_000189 CIL_000189_0001 CGP 16:67828157-67847811

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 IMP mitotic cell cycle
GO:0000775 IDA chromosome, centromeric region
GO:0000776 IEA:IDA kinetochore
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007059 IMP chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0031965 IDA nuclear membrane
GO:0046982 IEA protein heterodimerization activity
GO:0051276 IMP chromosome organization
GO:0051382 IEA:IMP kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091271 CENPT centromere protein T protein_coding Danio_rerio
ENSMUSG00000036672 Cenpt centromere protein T protein_coding Mus_musculus

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