C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methenyltetrahydrofolate synthetase domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103248 MTHFSD 9606 - 16:86530176-86555235 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360900 MTHFSD-001 86530176-86555210 protein_coding
  ENST00000381214 MTHFSD-003 86531972-86555203 protein_coding
  ENST00000543303 MTHFSD-002 86531972-86555203 protein_coding
  ENST00000546093 MTHFSD-004 86530833-86555235 protein_coding
  ENST00000561522 MTHFSD-010 86542117-86555235 protein_coding
  ENST00000561848 MTHFSD-016 86552038-86553721 processed_transcript
  ENST00000561989 MTHFSD-012 86548067-86555169 protein_coding
  ENST00000562096 MTHFSD-019 86532362-86542545 retained_intron
  ENST00000562940 MTHFSD-005 86540720-86554749 protein_coding
  ENST00000562994 MTHFSD-009 86542112-86555235 protein_coding
  ENST00000564364 MTHFSD-014 86546605-86555154 protein_coding
  ENST00000565482 MTHFSD-015 86548488-86555021 protein_coding
  ENST00000566050 MTHFSD-007 86531972-86555203 nonsense_mediated_decay
  ENST00000566469 MTHFSD-018 86541535-86554748 protein_coding
  ENST00000567539 MTHFSD-013 86532336-86555235 nonsense_mediated_decay
  ENST00000568037 MTHFSD-017 86547146-86555178 protein_coding
  ENST00000568798 MTHFSD-008 86542110-86555235 nonsense_mediated_decay
  ENST00000569000 MTHFSD-011 86541739-86555235 protein_coding
  ENST00000625049 MTHFSD-006 86530178-86533800 TEC

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000360900ENST00000543303ENST00000546093ENST00000561522ENST00000561989ENST00000562096ENST00000562940ENST00000566469ENST00000568037ENST00000568798ENST00000569000ENST00000625049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000360900 N/A N/A N/A 0.961±0.00 0.554±0.00 0.863±0.00 0.935±0.00 0.628±0.00 0.682±0.23 N/A 0.674±0.28 2.164±1.43 8.425±0.00
ENST00000543303 N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000546093 0.509±0.00 N/A N/A N/A 0.856±0.00 0.586±0.36 0.331±0.00 0.957±0.00 0.740±0.00 1.557±0.00 N/A 1.744±0.00 3.533±1.18
ENST00000561522 N/A N/A N/A 0.578±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00 N/A N/A
ENST00000562096 N/A N/A N/A N/A 1.033±0.00 N/A N/A 2.075±0.00 N/A N/A N/A N/A N/A
ENST00000562940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A
ENST00000566469 N/A N/A 1.237±0.00 0.412±0.00 N/A N/A 0.394±0.00 N/A N/A N/A 0.313±0.00 1.328±0.00 N/A
ENST00000568037 N/A N/A N/A N/A N/A 0.961±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000568798 N/A N/A N/A N/A 0.835±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569000 N/A N/A N/A N/A N/A N/A N/A N/A 1.014±0.00 N/A N/A N/A N/A
ENST00000625049 N/A 0.858±0.00 0.319±0.00 N/A 0.384±0.00 0.193±0.00 N/A N/A N/A N/A N/A 1.083±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L5 CIL_0008L5_0001 VISTA 16:86096481-86697120
CIL_0008XN CIL_0008XN_0001 VISTA 16:86335014-86936242
CIL_000576 CIL_000576_0002 CGP 16:86510527-86555235
CIL_00023B CIL_00023B_0001 CGP 16:86530176-86569728

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062042 mthfsd methenyltetrahydrofolate synthetase domain containing protein_coding Danio_rerio
ENSMUSG00000031816 Mthfsd methenyltetrahydrofolate synthetase domain containing protein_coding Mus_musculus

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