C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroid hormone receptor interactor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103671 TRIP4 9606 + 15:64387748-64455303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261884 TRIP4-001 64387804-64455303 protein_coding
  ENST00000557834 TRIP4-009 64387836-64397735 processed_transcript
  ENST00000558162 TRIP4-004 64424115-64450986 protein_coding
  ENST00000558442 TRIP4-006 64387862-64394026 processed_transcript
  ENST00000558820 TRIP4-007 64387855-64409684 nonsense_mediated_decay
  ENST00000559565 TRIP4-008 64387753-64409802 processed_transcript
  ENST00000559777 TRIP4-003 64444659-64455236 processed_transcript
  ENST00000559833 TRIP4-005 64387748-64397760 processed_transcript
  ENST00000560475 TRIP4-012 64409718-64455303 protein_coding
  ENST00000560567 TRIP4-002 64387859-64424330 nonsense_mediated_decay
  ENST00000560920 TRIP4-010 64387862-64400821 nonsense_mediated_decay
  ENST00000561265 TRIP4-011 64393696-64409805 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261884ENST00000558820ENST00000559565ENST00000559833ENST00000560475ENST00000560567ENST00000561265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261884 5.710±0.00 7.559±0.00 1.194±0.00 3.413±0.00 1.845±1.09 2.265±1.83 2.061±1.83 4.834±4.03 2.972±0.00 3.145±1.65 0.862±0.71 4.475±3.39 7.187±1.18 4.781±0.63
ENST00000558820 N/A N/A N/A 0.264±0.00 N/A N/A N/A N/A N/A N/A N/A 4.715±0.00 7.174±0.00 4.780±0.00
ENST00000559565 N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A 1.523±0.00 N/A N/A N/A
ENST00000559833 N/A N/A N/A N/A N/A N/A N/A 1.179±0.00 N/A N/A N/A N/A N/A N/A
ENST00000560475 N/A N/A N/A N/A N/A N/A N/A 1.496±0.00 N/A N/A 2.948±0.00 N/A N/A N/A
ENST00000560567 N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A 0.566±0.00 N/A N/A N/A N/A 1.665±0.00
ENST00000561265 N/A N/A N/A N/A N/A 0.708±0.00 N/A N/A N/A 4.043±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0001 VISTA 15:64161231-64762365

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003713 TAS transcription coactivator activity
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0016922 IDA ligand-dependent nuclear receptor binding
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005033 trip4 thyroid hormone receptor interactor 4 protein_coding Danio_rerio
ENSMUSG00000032386 Trip4 thyroid hormone receptor interactor 4 protein_coding Mus_musculus

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