C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroid hormone receptor interactor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032386 Trip4 10090 - 9:65828930-65908794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117083 Trip4-002 65833156-65885056 protein_coding
  ENSMUST00000119245 Trip4-001 65831759-65908676 protein_coding
  ENSMUST00000122410 Trip4-004 65831136-65885055 protein_coding
  ENSMUST00000126517 Trip4-005 65894915-65908786 processed_transcript
  ENSMUST00000132380 Trip4-008 65839010-65853213 retained_intron
  ENSMUST00000133747 Trip4-006 65894577-65908719 processed_transcript
  ENSMUST00000134338 Trip4-003 65880994-65908786 protein_coding
  ENSMUST00000139346 Trip4-007 65898301-65908786 retained_intron
  ENSMUST00000143864 Trip4-009 65895381-65908794 processed_transcript
  ENSMUST00000179395 Trip4-201 65828930-65908794 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117083ENSMUST00000119245ENSMUST00000122410ENSMUST00000134338ENSMUST00000139346ENSMUST00000143864ENSMUST00000179395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117083 3.265±0.73 2.309±0.40 2.961±0.00 5.316±2.94 2.123±0.51 2.172±0.42 1.284±0.19 1.641±0.36 2.323±0.69 1.819±0.29 1.717±0.37 4.483±3.00 6.639±3.84 9.034±3.42
ENSMUST00000119245 1.124±0.28 N/A N/A N/A 0.943±0.29 0.345±0.11 0.417±0.18 0.663±0.17 N/A N/A 0.682±0.02 0.765±0.20 N/A N/A
ENSMUST00000122410 1.408±0.43 2.053±0.31 3.419±0.28 2.033±0.64 1.514±0.39 0.748±0.30 0.878±0.36 1.661±0.46 2.484±0.83 1.193±0.23 1.647±0.20 2.225±1.34 2.350±0.60 N/A
ENSMUST00000134338 N/A 2.031±0.00 N/A N/A N/A N/A N/A 3.304±0.35 N/A 2.267±0.00 N/A 2.050±0.44 N/A N/A
ENSMUST00000139346 N/A 2.835±0.00 N/A N/A 2.053±0.00 1.920±0.35 N/A 3.188±0.00 N/A N/A N/A 4.930±0.00 N/A 16.816±0.00
ENSMUST00000143864 N/A 3.309±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.340±0.00
ENSMUST00000179395 0.726±0.00 0.565±0.00 0.836±0.00 1.357±0.69 N/A 0.169±0.00 0.235±0.00 0.775±0.00 0.751±0.09 0.781±0.00 N/A 0.718±0.30 0.683±0.29 1.871±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110
CIL_0003WZ CIL_0003WZ_0002 CGP 9:65692391-65908794

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005033 trip4 thyroid hormone receptor interactor 4 protein_coding Danio_rerio
ENSG00000103671 TRIP4 thyroid hormone receptor interactor 4 protein_coding Homo_sapiens

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