C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor interactor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261884 TRIP4-001 ENSG00000103671 9606 + 15:64387804-64455303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261884 5.710±0.00 7.559±0.00 1.194±0.00 3.413±0.00 1.845±1.09 2.265±1.83 2.061±1.83 4.834±4.03 2.972±0.00 3.145±1.65 0.862±0.71 4.475±3.39 7.187±1.18 4.781±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0001 VISTA 15:64161231-64762365

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 TAS transcription coactivator activity
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0016922 IDA ligand-dependent nuclear receptor binding
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119245 Trip4-001 protein_coding Mus_musculus 0 2409
ENSMUST00000117083 Trip4-002 protein_coding Mus_musculus 0 2377
ENSMUST00000179395 Trip4-201 protein_coding Mus_musculus 0 1940
ENSMUST00000122410 Trip4-004 protein_coding Mus_musculus 0 1912
ENSMUST00000132380 Trip4-008 retained_intron Mus_musculus 0 350
ENSMUST00000134338 Trip4-003 protein_coding Mus_musculus 0 272

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