C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial methionyl-tRNA formyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103707 MTFMT 9606 - 15:65001512-65029639 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220058 MTFMT-001 65001512-65029627 protein_coding
  ENST00000543678 MTFMT-002 65015833-65029639 nonsense_mediated_decay
  ENST00000558460 MTFMT-003 65002578-65029616 nonsense_mediated_decay
  ENST00000558614 MTFMT-004 65016255-65029574 retained_intron
  ENST00000559633 MTFMT-007 65026748-65029532 retained_intron
  ENST00000560717 MTFMT-005 65002996-65029598 nonsense_mediated_decay
  ENST00000561025 MTFMT-006 65021514-65026931 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220058ENST00000543678ENST00000558460ENST00000558614ENST00000559633ENST00000560717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220058 0.179±0.00 0.724±0.00 0.169±0.00 0.976±0.00 N/A 0.571±0.25 0.473±0.04 0.841±0.00 0.525±0.18 0.282±0.00 0.380±0.03 1.265±0.73 0.419±0.05 0.534±0.00
ENST00000543678 N/A N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558460 1.958±0.00 2.674±0.00 N/A 1.117±0.26 1.917±0.00 0.908±0.66 4.874±0.00 1.634±1.02 1.248±0.87 1.268±0.73 3.482±0.00 4.830±1.09 1.677±0.32 3.204±0.15
ENST00000558614 N/A N/A N/A 0.677±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559633 N/A N/A 0.472±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.881±0.00 N/A
ENST00000560717 1.474±0.00 2.273±0.00 N/A 1.616±0.00 1.334±0.00 1.751±0.00 0.325±0.00 3.178±0.00 2.009±0.00 1.115±0.00 1.055±0.19 2.088±0.17 1.551±0.00 3.691±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0001 VISTA 15:64785331-65389080

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004479 IEA methionyl-tRNA formyltransferase activity
GO:0005739 IEA mitochondrion
GO:0006413 IEA translational initiation
GO:0009058 IEA biosynthetic process
GO:0016742 IEA hydroxymethyl-, formyl- and related transferase activity
GO:0071951 IEA conversion of methionyl-tRNA to N-formyl-methionyl-tRNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005448 mtfmt mitochondrial methionyl-tRNA formyltransferase protein_coding Danio_rerio
ENSMUSG00000059183 Mtfmt mitochondrial methionyl-tRNA formyltransferase protein_coding Mus_musculus

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