C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neurocalcin delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104490 NCALD 9606 - 8:101686543-102124907 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220931 NCALD-003 101686727-101790961 protein_coding
  ENST00000311028 NCALD-201 101686543-102124334 protein_coding
  ENST00000395923 NCALD-202 101686543-102124907 protein_coding
  ENST00000517531 NCALD-012 101719315-102123950 protein_coding
  ENST00000517639 NCALD-018 101915512-102124261 retained_intron
  ENST00000517822 NCALD-017 101719295-102124263 protein_coding
  ENST00000518166 NCALD-010 101719280-102124334 protein_coding
  ENST00000518661 NCALD-013 101719408-102020406 protein_coding
  ENST00000518727 NCALD-015 101719265-101986492 protein_coding
  ENST00000518952 NCALD-025 101745825-102124261 processed_transcript
  ENST00000519098 NCALD-029 101719373-101790977 protein_coding
  ENST00000519508 NCALD-007 101688105-101719648 protein_coding
  ENST00000520346 NCALD-030 101719397-101790958 protein_coding
  ENST00000520425 NCALD-014 101719270-101986606 protein_coding
  ENST00000520690 NCALD-019 101692866-101975329 protein_coding
  ENST00000521371 NCALD-021 101785856-101790969 processed_transcript
  ENST00000521599 NCALD-001 101687895-102124320 protein_coding
  ENST00000521957 NCALD-020 101779922-101790977 processed_transcript
  ENST00000521964 NCALD-011 101719369-102124331 protein_coding
  ENST00000522078 NCALD-008 101719587-102124857 protein_coding
  ENST00000522206 NCALD-009 101719473-102124814 protein_coding
  ENST00000522252 NCALD-023 101719293-101790977 protein_coding
  ENST00000522448 NCALD-031 101688643-101790969 protein_coding
  ENST00000522754 NCALD-006 101688478-101694389 retained_intron
  ENST00000522951 NCALD-002 101688464-101790977 protein_coding
  ENST00000523645 NCALD-026 101719621-101790947 protein_coding
  ENST00000523923 NCALD-016 101719386-102124264 protein_coding
  ENST00000524101 NCALD-022 101788634-101790934 processed_transcript
  ENST00000524137 NCALD-027 101719583-101788998 protein_coding
  ENST00000524209 NCALD-028 101719314-102124261 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220931ENST00000311028ENST00000517822ENST00000518166ENST00000518661ENST00000519508ENST00000521599ENST00000521964ENST00000522448ENST00000522951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220931 2.661±0.00 4.378±0.00 0.993±0.00 29.818±11.87 9.308±0.00 3.588±2.86 1.668±0.72 1.730±1.28 3.337±1.02 3.137±0.06 0.910±0.67 5.561±6.78 2.156±0.62 2.724±0.73
ENST00000311028 N/A N/A N/A 9.661±0.00 N/A N/A N/A N/A N/A N/A N/A 2.973±2.65 0.788±0.38 1.068±0.00
ENST00000517822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.649±0.00 N/A N/A N/A
ENST00000518166 N/A N/A N/A N/A N/A N/A 2.005±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000518661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.063±0.00 N/A N/A N/A
ENST00000519508 N/A N/A 1.155±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.769±0.00 N/A
ENST00000521599 N/A N/A N/A N/A N/A N/A N/A 0.359±0.00 2.071±0.00 N/A N/A 0.836±0.00 N/A N/A
ENST00000521964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.747±0.00 N/A N/A
ENST00000522448 N/A N/A 3.425±0.00 N/A 5.266±0.00 N/A N/A N/A N/A N/A 5.973±0.00 N/A N/A N/A
ENST00000522951 N/A N/A 1.229±0.00 31.394±0.00 2.729±0.00 0.972±0.00 0.728±0.00 N/A 3.872±0.00 3.609±0.00 N/A 1.762±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004T4 CIL_0004T4_0002 CGP 8:101492432-102124907

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003073 IEA regulation of systemic arterial blood pressure
GO:0003779 IDA actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005622 IDA intracellular
GO:0005829 NAS cytosol
GO:0007268 TAS synaptic transmission
GO:0015631 IDA tubulin binding
GO:0016192 NAS vesicle-mediated transport
GO:0019722 IEA calcium-mediated signaling
GO:0030130 NAS clathrin coat of trans-Golgi network vesicle
GO:0030276 IDA clathrin binding
GO:0043014 IEA alpha-tubulin binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070688 ncalda neurocalcin delta a protein_coding Danio_rerio
ENSMUSG00000051359 Ncald neurocalcin delta protein_coding Mus_musculus

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