C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH2 domain containing 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104611 SH2D4A 9606 + 8:19313617-19396218 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265807 SH2D4A-001 19313617-19396218 protein_coding
  ENST00000518040 SH2D4A-002 19313696-19395027 protein_coding
  ENST00000518093 SH2D4A-004 19360788-19364099 retained_intron
  ENST00000519207 SH2D4A-003 19313976-19394953 protein_coding
  ENST00000522328 SH2D4A-005 19363809-19373617 retained_intron
  ENST00000523736 SH2D4A-006 19319590-19361298 protein_coding
  ENST00000620990 SH2D4A-201 19357203-19394724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000265807ENST00000518040ENST00000519207ENST00000522328ENST00000523736ENST00000620990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000265807 0.599±0.00 N/A 0.770±0.00 0.549±0.00 0.772±0.00 1.933±0.00 0.126±0.00 2.143±0.09 1.539±0.00 0.074±0.00 4.410±1.61 4.505±3.02 N/A
ENST00000518040 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A
ENST00000519207 N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522328 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A
ENST00000523736 N/A N/A 7.282±0.00 0.232±0.00 1.688±0.00 N/A 0.660±0.00 N/A 1.956±0.00 0.769±0.00 4.059±0.00 14.024±0.00 0.355±0.00
ENST00000620990 N/A 0.284±0.00 N/A N/A N/A N/A 0.157±0.00 N/A N/A 0.092±0.00 N/A N/A 0.447±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EP CIL_0004EP_0001 CGP 8:18527301-19396218
CIL_0003IX CIL_0003IX_0001 CGP 8:19313617-19758029

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0010923 IDA negative regulation of phosphatase activity
GO:0019902 IDA phosphatase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041378 sh2d4a SH2 domain containing 4A protein_coding Danio_rerio
ENSMUSG00000053886 Sh2d4a SH2 domain containing 4A protein_coding Mus_musculus

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