C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104611-ENSG00000147408 CGP 9606 8:19313617-19758029
GeneTranscriptPositionBiotype
ENSG00000104611 (SH2D4A)
SH2 domain containing 4A 		ENST00000265807 (SH2D4A-001) 19313617-19396218 protein_coding
ENST00000518040 (SH2D4A-002) 19313696-19395027 protein_coding
ENST00000518093 (SH2D4A-004) 19360788-19364099 retained_intron
ENST00000519207 (SH2D4A-003) 19313976-19394953 protein_coding
ENST00000522328 (SH2D4A-005) 19363809-19373617 retained_intron
ENST00000523736 (SH2D4A-006) 19319590-19361298 protein_coding
ENST00000620990 (SH2D4A-201) 19357203-19394724 protein_coding
ENSG00000147408 (CSGALNACT1)
chondroitin sulfate N-acetylgalactosaminyltransferase 1 		ENST00000332246 (CSGALNACT1-001) 19404161-19682583 protein_coding
ENST00000397998 (CSGALNACT1-002) 19404161-19682761 nonsense_mediated_decay
ENST00000454498 (CSGALNACT1-004) 19404161-19602495 protein_coding
ENST00000517494 (CSGALNACT1-006) 19505545-19758029 protein_coding
ENST00000517651 (CSGALNACT1-011) 19505880-19642022 processed_transcript
ENST00000518542 (CSGALNACT1-016) 19420383-19495191 processed_transcript
ENST00000519222 (CSGALNACT1-003) 19439877-19602759 nonsense_mediated_decay
ENST00000520003 (CSGALNACT1-012) 19505674-19602495 protein_coding
ENST00000522573 (CSGALNACT1-008) 19506116-19757217 processed_transcript
ENST00000522732 (CSGALNACT1-015) 19506037-19532020 processed_transcript
ENST00000522854 (CSGALNACT1-005) 19405780-19601865 protein_coding
ENST00000523227 (CSGALNACT1-010) 19505906-19683240 processed_transcript
ENST00000523262 (CSGALNACT1-007) 19505523-19757938 protein_coding
ENST00000523919 (CSGALNACT1-014) 19585286-19602224 processed_transcript
ENST00000524112 (CSGALNACT1-013) 19587874-19602224 processed_transcript
ENST00000524213 (CSGALNACT1-009) 19505792-19757305 protein_coding
ENSG00000253270 (RP11-1105O14.1)
 ENST00000519803 (RP11-1105O14.1-001) 19678572-19688934 lincRNA
ENSG00000279858 (RP11-618M23.5)
 ENST00000623082 (RP11-618M23.5-001) 19375128-19375622 TEC
CIL_0003IX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053886-ENSMUSG00000036356 CGP 10090 8:68276567-68735146
GeneTranscriptPositionBiotype
ENSMUSG00000036356 (Csgalnact1)
chondroitin sulfate N-acetylgalactosaminyltransferase 1 		ENSMUST00000078350 (Csgalnact1-001) 68356781-68735146 protein_coding
ENSMUST00000125727 (Csgalnact1-006) 68557071-68735115 processed_transcript
ENSMUST00000130214 (Csgalnact1-002) 68357967-68735114 protein_coding
ENSMUST00000136060 (Csgalnact1-003) 68388643-68735102 protein_coding
ENSMUST00000139141 (Csgalnact1-004) 68645799-68735115 processed_transcript
ENSMUST00000143586 (Csgalnact1-005) 68461581-68735115 processed_transcript
ENSMUST00000150083 (Csgalnact1-007) 68556972-68735114 processed_transcript
ENSMUSG00000053886 (Sh2d4a)
SH2 domain containing 4A 		ENSMUST00000066594 (Sh2d4a-001) 68276567-68347694 protein_coding
ENSMUSG00000085197 (1700125H03Rik)
RIKEN cDNA 1700125H03 gene 		ENSMUST00000124929 (1700125H03Rik-002) 68368434-68372293 antisense
ENSMUST00000139265 (1700125H03Rik-001) 68368466-68375710 antisense
ENSMUSG00000085487 (Gm15654)
predicted gene 15654 		ENSMUST00000152660 (Gm15654-001) 68620138-68620437 unprocessed_pseudogene
ENSMUSG00000087489 (Gm15656)
predicted gene 15656 		ENSMUST00000132076 (Gm15656-001) 68457148-68458681 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IX_0001ENSG00000104611ENST00000265807ENST00000518040ENST00000518093ENST00000519207ENST00000522328ENST00000523736ENST00000620990ENSG00000147408ENST00000332246ENST00000397998ENST00000454498ENST00000517494ENST00000517651ENST00000518542ENST00000519222ENST00000520003ENST00000522573ENST00000522732ENST00000522854ENST00000523227ENST00000523262ENST00000523919ENST00000524112ENST00000524213ENSG00000253270ENST00000519803ENSG00000279858ENST00000623082CIL_0003IX_0002ENSMUSG00000036356ENSMUST00000078350ENSMUST00000125727ENSMUST00000130214ENSMUST00000136060ENSMUST00000139141ENSMUST00000143586ENSMUST00000150083ENSMUSG00000053886ENSMUST00000066594ENSMUSG00000085197ENSMUST00000124929ENSMUST00000139265ENSMUSG00000085487ENSMUST00000152660ENSMUSG00000087489ENSMUST00000132076
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IX_0001ENSG00000104611ENST00000265807ENST00000518040ENST00000519207ENST00000522328ENST00000523736ENST00000620990ENSG00000147408ENST00000332246ENST00000454498ENST00000519222ENST00000522573ENST00000522854ENSG00000253270ENST00000519803ENSG00000279858ENST00000623082CIL_0003IX_0002ENSMUSG00000036356ENSMUST00000078350ENSMUST00000125727ENSMUST00000130214ENSMUST00000136060ENSMUSG00000053886ENSMUST00000066594ENSMUSG00000085197ENSMUST00000124929ENSMUST00000139265ENSMUSG00000085487ENSMUST00000152660ENSMUSG00000087489ENSMUST00000132076
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104611 ENST00000265807 0.599±0.00 N/A 0.770±0.00 0.549±0.00 0.772±0.00 1.933±0.00 0.126±0.00 2.143±0.09 1.539±0.00 N/A 0.074±0.00 4.410±1.61 4.505±3.02 N/A
ENST00000518040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A
ENST00000518093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519207 N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A
ENST00000523736 N/A N/A 7.282±0.00 0.232±0.00 1.688±0.00 N/A 0.660±0.00 N/A 1.956±0.00 N/A 0.769±0.00 4.059±0.00 14.024±0.00 0.355±0.00
ENST00000620990 N/A 0.284±0.00 N/A N/A N/A N/A 0.157±0.00 N/A N/A N/A 0.092±0.00 N/A N/A 0.447±0.00
ENSG00000147408 ENST00000332246 N/A N/A N/A N/A 1.856±0.00 0.709±0.00 N/A N/A N/A N/A N/A 2.773±0.00 N/A N/A
ENST00000397998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454498 N/A N/A N/A 2.448±0.00 0.604±0.00 N/A N/A N/A N/A N/A N/A 1.504±0.00 N/A N/A
ENST00000517494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519222 N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A 0.649±0.00 0.280±0.00 N/A N/A N/A
ENST00000520003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.528±0.00 N/A N/A N/A
ENST00000522732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522854 N/A N/A N/A 1.666±0.00 1.374±0.00 N/A 1.475±0.00 N/A 2.742±2.18 8.408±0.00 N/A 2.574±1.24 4.567±0.00 1.689±0.00
ENST00000523227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253270 ENST00000519803 N/A 0.065±0.00 N/A N/A 0.097±0.00 N/A 0.615±0.42 N/A N/A N/A N/A N/A 0.708±0.05 N/A
ENSG00000279858 ENST00000623082 N/A N/A N/A N/A 0.594±0.00 N/A N/A N/A N/A N/A N/A 0.130±0.00 0.090±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036356 ENSMUST00000078350 0.689±0.42 0.173±0.00 0.823±0.10 0.868±0.64 0.546±0.24 0.189±0.00 0.382±0.05 0.325±0.10 0.184±0.09 1.849±0.62 0.345±0.14 0.579±0.20 2.517±1.05 0.199±0.00
ENSMUST00000125727 N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130214 0.797±0.21 0.198±0.00 N/A 0.051±0.00 0.489±0.26 0.168±0.05 0.582±0.20 0.341±0.07 0.077±0.01 1.872±0.29 0.206±0.06 0.898±0.42 2.028±0.00 N/A
ENSMUST00000136060 0.869±0.25 0.378±0.00 N/A 0.200±0.14 0.622±0.17 0.309±0.09 0.170±0.00 0.522±0.16 0.099±0.04 2.713±0.68 0.242±0.00 1.019±0.46 0.263±0.00 N/A
ENSMUST00000139141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053886 ENSMUST00000066594 2.408±0.34 2.950±0.92 8.522±1.27 0.112±0.04 2.575±0.50 12.261±0.92 2.430±1.08 5.600±0.37 3.701±1.62 6.816±0.61 0.602±0.12 7.122±1.97 3.207±2.04 1.430±0.31
ENSMUSG00000085197 ENSMUST00000124929 N/A N/A N/A 0.095±0.06 N/A 0.160±0.00 0.082±0.00 0.201±0.14 0.025±0.00 N/A 0.115±0.01 0.148±0.07 N/A 19.651±3.20
ENSMUST00000139265 N/A N/A N/A N/A N/A N/A N/A 0.133±0.06 0.068±0.07 N/A N/A N/A 0.084±0.00 7.959±1.66
ENSMUSG00000085487 ENSMUST00000152660 N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A 0.070±0.00 0.617±0.27 N/A N/A 0.036±0.00 N/A
ENSMUSG00000087489 ENSMUST00000132076 0.079±0.00 N/A 0.047±0.00 0.298±0.40 N/A N/A 0.077±0.00 N/A 0.016±0.00 0.155±0.04 N/A 0.151±0.00 0.327±0.38 0.089±0.00

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