C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease H2, subunit A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104889 RNASEH2A 9606 + 19:12806580-12813638 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221486 RNASEH2A-001 12806580-12813637 protein_coding
  ENST00000590121 RNASEH2A-003 12806677-12807957 retained_intron
  ENST00000590279 RNASEH2A-004 12806684-12807505 retained_intron
  ENST00000593017 RNASEH2A-002 12806592-12813638 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221486ENST00000590121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221486 6.558±0.00 8.757±0.00 0.672±0.00 3.754±1.47 4.110±2.87 5.038±1.81 1.276±0.66 4.763±3.02 2.039±0.36 3.196±1.46 3.314±2.67 13.055±6.72 18.326±2.77 18.217±0.11
ENST00000590121 N/A 1.460±0.00 N/A 0.911±0.00 0.203±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_00016T CIL_00016T_0002 CGP 19:12763003-12872740
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004523 IDA:IEA RNA-DNA hybrid ribonuclease activity
GO:0004540 TAS ribonuclease activity
GO:0005634 IEA nucleus
GO:0006260 TAS DNA replication
GO:0006298 IDA mismatch repair
GO:0006401 IDA RNA catabolic process
GO:0016070 IEA RNA metabolic process
GO:0032299 IDA ribonuclease H2 complex
GO:0046872 IEA metal ion binding
GO:0090501 TAS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018891 rnaseh2a ribonuclease H2, subunit A protein_coding Danio_rerio
ENSMUSG00000052926 Rnaseh2a ribonuclease H2, large subunit protein_coding Mus_musculus

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