C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease H2, large subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052926 Rnaseh2a 10090 - 8:84956610-84969767 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065049 Rnaseh2a-005 84957667-84966041 protein_coding
  ENSMUST00000109736 Rnaseh2a-001 84956610-84969740 protein_coding
  ENSMUST00000109738 Rnaseh2a-201 84956610-84966011 protein_coding
  ENSMUST00000122931 Rnaseh2a-004 84957974-84965961 retained_intron
  ENSMUST00000126029 Rnaseh2a-009 84957678-84958116 retained_intron
  ENSMUST00000128972 Rnaseh2a-006 84957667-84966064 protein_coding
  ENSMUST00000130902 Rnaseh2a-003 84965952-84966876 protein_coding
  ENSMUST00000137791 Rnaseh2a-002 84966229-84969581 processed_transcript
  ENSMUST00000140561 Rnaseh2a-007 84965607-84969767 protein_coding
  ENSMUST00000147812 Rnaseh2a-008 84957667-84969440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryPlacentaTestisENSMUST00000065049ENSMUST00000109736ENSMUST00000122931ENSMUST00000140561ENSMUST00000147812
Transcript ID Adrenal Brain Breast Colon Ovary Placenta Testis
ENSMUST00000065049 N/A 30.673±0.00 22.436±0.00 26.010±0.00 51.663±6.10 13.639±3.47 142.134±15.22
ENSMUST00000109736 11.824±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000122931 N/A N/A N/A N/A 29.726±0.00 16.333±5.04 142.398±0.00
ENSMUST00000140561 N/A N/A N/A N/A N/A N/A 247.632±64.60
ENSMUST00000147812 N/A N/A N/A N/A N/A N/A 230.279±63.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_00063Y CIL_00063Y_0002 CGP 8:84956610-84974834

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004523 ISS RNA-DNA hybrid ribonuclease activity
GO:0005634 IEA nucleus
GO:0006298 IMP mismatch repair
GO:0006401 ISS RNA catabolic process
GO:0032299 IDA ribonuclease H2 complex
GO:0046872 IEA metal ion binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018891 rnaseh2a ribonuclease H2, subunit A protein_coding Danio_rerio
ENSG00000104889 RNASEH2A ribonuclease H2, subunit A protein_coding Homo_sapiens

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