C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104969 SGTA 9606 - 19:2754714-2783371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221566 SGTA-001 2754714-2783371 protein_coding
  ENST00000586711 SGTA-003 2777493-2783282 processed_transcript
  ENST00000587866 SGTA-006 2767582-2770781 protein_coding
  ENST00000589251 SGTA-004 2763663-2783270 protein_coding
  ENST00000591984 SGTA-005 2755549-2759542 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221566ENST00000589251ENST00000591984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221566 25.502±0.00 27.267±0.00 3.095±0.00 30.264±22.39 13.406±11.42 17.242±14.50 12.292±10.47 16.033±14.25 10.847±8.76 14.327±10.82 22.975±15.27 29.287±19.14 44.354±10.75 41.511±2.40
ENST00000589251 N/A N/A N/A N/A N/A 1.092±0.00 N/A 2.058±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591984 N/A N/A N/A N/A N/A N/A 1.491±0.00 3.349±0.00 1.255±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RR CIL_0001RR_0001 CGP 19:2732204-2783371
CIL_0001RQ CIL_0001RQ_0001 CGP 19:2754714-2815807

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process
GO:0016032 IEA viral process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019941 SGTA (1 of 2) small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha protein_coding Danio_rerio
ENSDARG00000089293 sgta small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha protein_coding Danio_rerio
ENSMUSG00000004937 Sgta small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha protein_coding Mus_musculus

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