C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141873-ENSG00000104969 CGP 9606 19:2732204-2783371
GeneTranscriptPositionBiotype
ENSG00000104969 (SGTA)
small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 		ENST00000221566 (SGTA-001) 2754714-2783371 protein_coding
ENST00000586711 (SGTA-003) 2777493-2783282 processed_transcript
ENST00000587866 (SGTA-006) 2767582-2770781 protein_coding
ENST00000589251 (SGTA-004) 2763663-2783270 protein_coding
ENST00000591984 (SGTA-005) 2755549-2759542 retained_intron
ENSG00000141873 (SLC39A3)
solute carrier family 39 (zinc transporter), member 3 		ENST00000269740 (SLC39A3-002) 2732524-2740152 protein_coding
ENST00000455372 (SLC39A3-001) 2734524-2740028 protein_coding
ENST00000545664 (SLC39A3-003) 2732204-2740017 protein_coding
ENST00000589166 (SLC39A3-006) 2733373-2739475 protein_coding
ENST00000589363 (SLC39A3-004) 2733288-2740017 protein_coding
ENST00000590875 (SLC39A3-005) 2737278-2740017 processed_transcript
CIL_0001RR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046822-ENSMUSG00000004937 CGP 10090 10:81028538-81060178
GeneTranscriptPositionBiotype
ENSMUSG00000004937 (Sgta)
small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 		ENSMUST00000005067 (Sgta-201) 81044075-81060178 protein_coding
ENSMUSG00000046822 (Slc39a3)
solute carrier family 39 (zinc transporter), member 3 		ENSMUST00000059551 (Slc39a3-002) 81028540-81037308 protein_coding
ENSMUST00000117276 (Slc39a3-001) 81028538-81037426 protein_coding
ENSMUST00000152177 (Slc39a3-004) 81033883-81037250 processed_transcript
ENSMUST00000154877 (Slc39a3-003) 81033857-81037282 processed_transcript
ENSMUST00000168076 (Slc39a3-201) 81028541-81033912 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RR_0001ENSG00000104969ENST00000221566ENST00000586711ENST00000587866ENST00000589251ENST00000591984ENSG00000141873ENST00000269740ENST00000455372ENST00000545664ENST00000589166ENST00000589363ENST00000590875CIL_0001RR_0002ENSMUSG00000004937ENSMUST00000005067ENSMUSG00000046822ENSMUST00000059551ENSMUST00000117276ENSMUST00000152177ENSMUST00000154877ENSMUST00000168076
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RR_0001ENSG00000104969ENST00000221566ENST00000589251ENST00000591984ENSG00000141873ENST00000269740ENST00000455372ENST00000545664ENST00000589166ENST00000589363CIL_0001RR_0002ENSMUSG00000004937ENSMUST00000005067ENSMUSG00000046822ENSMUST00000059551ENSMUST00000117276ENSMUST00000168076
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104969 ENST00000221566 25.502±0.00 27.267±0.00 3.095±0.00 30.264±22.39 13.406±11.42 17.242±14.50 12.292±10.47 16.033±14.25 10.847±8.76 14.327±10.82 22.975±15.27 29.287±19.14 44.354±10.75 41.511±2.40
ENST00000586711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589251 N/A N/A N/A N/A N/A 1.092±0.00 N/A 2.058±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591984 N/A N/A N/A N/A N/A N/A 1.491±0.00 3.349±0.00 1.255±0.00 N/A N/A N/A N/A N/A
ENSG00000141873 ENST00000269740 8.317±0.00 15.750±0.00 0.307±0.00 N/A 7.051±6.19 4.797±2.40 N/A 17.992±0.00 8.522±7.03 2.707±2.41 5.833±2.41 6.069±0.74 14.673±4.08 36.420±3.14
ENST00000455372 0.707±0.00 2.393±0.00 0.089±0.00 N/A 1.117±0.87 0.640±0.00 N/A 1.894±0.00 N/A 0.249±0.04 N/A 0.677±0.00 1.358±0.11 N/A
ENST00000545664 N/A N/A 0.283±0.00 N/A N/A 2.715±0.00 N/A N/A N/A 0.634±0.00 N/A 15.352±14.66 N/A 17.410±0.73
ENST00000589166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A
ENST00000589363 7.232±0.00 N/A N/A N/A 1.702±0.00 N/A N/A N/A N/A N/A 4.273±0.00 9.748±0.00 N/A N/A
ENST00000590875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004937 ENSMUST00000005067 76.058±14.74 154.945±7.98 28.881±4.60 90.269±14.45 71.092±21.33 57.832±14.94 24.057±3.33 55.666±15.49 28.333±9.45 55.929±8.55 30.116±3.44 67.681±29.96 66.777±29.27 54.460±16.45
ENSMUSG00000046822 ENSMUST00000059551 12.836±2.56 24.679±14.52 5.604±2.64 10.293±0.69 10.294±4.76 8.247±1.66 3.835±1.15 8.136±2.75 1.501±0.95 9.895±2.97 1.890±0.57 9.076±4.03 1.801±0.94 5.619±2.60
ENSMUST00000117276 5.027±1.40 15.237±4.28 3.784±0.37 15.697±1.76 2.612±0.94 8.596±1.34 1.512±0.63 4.481±2.01 2.265±1.09 6.955±1.26 2.520±1.42 8.772±3.31 1.870±0.13 8.328±4.25
ENSMUST00000152177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168076 N/A 26.601±7.34 2.057±0.00 4.497±1.94 2.732±0.99 3.224±0.00 2.861±0.00 1.739±0.17 0.782±0.00 N/A 2.065±1.06 4.386±0.92 1.078±0.60 0.889±0.00

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