C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105143 SLC1A6 9606 - 19:14950034-15022990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221742 SLC1A6-002 14950179-14972918 protein_coding
  ENST00000430939 SLC1A6-001 14950034-15010620 protein_coding
  ENST00000544886 SLC1A6-004 14961310-14980298 protein_coding
  ENST00000594383 SLC1A6-009 14972805-14979688 protein_coding
  ENST00000595863 SLC1A6-008 14971750-15022990 protein_coding
  ENST00000596697 SLC1A6-006 14964009-14975273 retained_intron
  ENST00000597262 SLC1A6-011 14968369-14979722 protein_coding
  ENST00000598504 SLC1A6-003 14961310-14979693 protein_coding
  ENST00000599636 SLC1A6-007 14968425-15010643 protein_coding
  ENST00000600144 SLC1A6-005 14950195-14977027 protein_coding
  ENST00000601761 SLC1A6-010 14972689-14978146 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221742ENST00000430939ENST00000544886ENST00000596697ENST00000598504
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221742 N/A N/A 1.569±0.78 N/A N/A N/A N/A N/A N/A N/A N/A 2.152±1.17 10.523±7.76
ENST00000430939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.037±0.00 N/A
ENST00000544886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.303±0.00 1.487±0.00
ENST00000596697 0.085±0.00 0.270±0.00 N/A 0.149±0.00 0.067±0.00 0.080±0.00 0.105±0.00 0.024±0.00 0.155±0.00 0.049±0.00 0.007±0.00 N/A N/A
ENST00000598504 0.026±0.00 0.054±0.00 N/A 0.037±0.00 0.034±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005313 IEA L-glutamate transmembrane transporter activity
GO:0005794 IEA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 TAS ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0007268 TAS synaptic transmission
GO:0015183 TAS L-aspartate transmembrane transporter activity
GO:0015810 TAS aspartate transport
GO:0015813 IEA L-glutamate transport
GO:0016020 TAS:IEA membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0042391 IEA regulation of membrane potential
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010096 slc1a6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 protein_coding Danio_rerio
ENSMUSG00000005357 Slc1a6 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 protein_coding Mus_musculus

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