C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: programmed cell death 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105185 PDCD5 9606 + 19:32581068-32587452 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221784 PDCD5-010 32581202-32587425 nonsense_mediated_decay
  ENST00000379316 PDCD5-003 32581257-32587297 protein_coding
  ENST00000419343 PDCD5-002 32581201-32587387 protein_coding
  ENST00000586035 PDCD5-008 32581526-32587414 protein_coding
  ENST00000586316 PDCD5-005 32584869-32587425 retained_intron
  ENST00000588622 PDCD5-007 32586645-32587425 retained_intron
  ENST00000590247 PDCD5-001 32581068-32587427 protein_coding
  ENST00000592786 PDCD5-006 32581232-32587452 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221784ENST00000419343ENST00000586035ENST00000586316ENST00000590247
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221784 11.324±0.00 11.862±0.00 N/A 3.981±0.00 N/A 17.762±0.00 N/A N/A 5.538±0.00 N/A 1.327±0.00 10.791±0.00 7.842±0.00 N/A
ENST00000419343 N/A 2.992±0.00 N/A 1.728±0.39 2.072±0.00 0.420±0.00 N/A 2.139±0.00 0.964±0.00 1.706±0.67 N/A 4.826±2.67 N/A N/A
ENST00000586035 N/A N/A N/A N/A N/A 0.685±0.00 N/A N/A N/A N/A N/A 55.572±52.72 18.885±17.08 46.600±30.91
ENST00000586316 N/A N/A 0.986±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590247 22.605±0.00 26.769±0.00 0.912±0.00 12.036±4.23 20.305±14.96 13.284±11.15 25.901±19.96 16.574±8.42 7.791±4.50 9.149±5.89 18.606±14.18 44.078±22.83 33.017±5.65 50.920±14.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0043065 IMP positive regulation of apoptotic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026072 pdcd5 programmed cell death 5 protein_coding Danio_rerio
ENSMUSG00000030417 Pdcd5 programmed cell death 5 protein_coding Mus_musculus

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