C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: elongation factor RNA polymerase II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105656 ELL 9606 - 19:18442663-18522127 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262809 ELL-001 18442663-18522127 protein_coding
  ENST00000594635 ELL-002 18442665-18522116 nonsense_mediated_decay
  ENST00000596124 ELL-005 18444751-18475933 protein_coding
  ENST00000596915 ELL-007 18472407-18522067 retained_intron
  ENST00000608165 ELL-008 18446146-18450526 retained_intron
  ENST00000610152 ELL-009 18444516-18445399 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262809ENST00000596124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262809 10.478±0.00 10.987±0.00 0.419±0.00 1.786±0.88 2.757±2.03 7.588±0.00 1.667±1.08 2.827±2.51 1.281±0.73 12.500±0.00 5.174±0.00 7.515±0.79 10.432±1.35 12.676±3.14
ENST00000596124 N/A N/A 1.516±0.00 N/A 1.291±0.00 N/A N/A 0.393±0.00 1.134±0.00 1.459±0.00 2.279±0.00 5.266±4.27 N/A 16.429±9.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NO CIL_0004NO_0002 CGP 19:18442663-18544077

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 IEA:TAS transcription elongation from RNA polymerase II promoter
GO:0008023 IEA:IDA transcription elongation factor complex
GO:0010467 TAS gene expression
GO:0010923 IDA negative regulation of phosphatase activity
GO:0015030 IDA Cajal body
GO:0016032 TAS viral process
GO:0016607 IDA nuclear speck
GO:0019902 IDA phosphatase binding
GO:0032786 TAS positive regulation of DNA-templated transcription, elongation
GO:0032968 IMP positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 IDA transcriptionally active chromatin
GO:0035363 IDA histone locus body
GO:0042795 IMP snRNA transcription from RNA polymerase II promoter
GO:0042796 IMP snRNA transcription from RNA polymerase III promoter
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000568 ell elongation factor RNA polymerase II protein_coding Danio_rerio
ENSMUSG00000070002 Ell elongation factor RNA polymerase II protein_coding Mus_musculus

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