C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor RNA polymerase II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262809 ELL-001 ENSG00000105656 9606 - 19:18442663-18522127 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262809
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262809 10.478±0.00 10.987±0.00 0.419±0.00 1.786±0.88 2.757±2.03 7.588±0.00 1.667±1.08 2.827±2.51 1.281±0.73 12.500±0.00 5.174±0.00 7.515±0.79 10.432±1.35 12.676±3.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NO CIL_0004NO_0002 CGP 19:18442663-18544077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 IEA:TAS transcription elongation from RNA polymerase II promoter
GO:0008023 IEA:IDA transcription elongation factor complex
GO:0010467 TAS gene expression
GO:0010923 IDA negative regulation of phosphatase activity
GO:0015030 IDA Cajal body
GO:0016032 TAS viral process
GO:0016607 IDA nuclear speck
GO:0019902 IDA phosphatase binding
GO:0032786 TAS positive regulation of DNA-templated transcription, elongation
GO:0032968 IMP positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 IDA transcriptionally active chromatin
GO:0035363 IDA histone locus body
GO:0042795 IMP snRNA transcription from RNA polymerase II promoter
GO:0042796 IMP snRNA transcription from RNA polymerase III promoter
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093454 Ell-201 protein_coding Mus_musculus 0 1343

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