C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105996 HOXA2 9606 - 7:27100354-27102811 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222718 HOXA2-001 27100354-27102811 protein_coding
  ENST00000612779 HOXA2-002 27100694-27102686 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000222718ENST00000612779
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000222718 0.190±0.00 0.247±0.00 0.058±0.00 0.267±0.11 0.612±0.00 0.081±0.00 0.771±0.00 N/A 0.508±0.27 0.113±0.00 0.789±0.47 0.251±0.10
ENST00000612779 N/A 0.444±0.00 N/A 0.189±0.15 0.626±0.14 N/A 0.189±0.00 0.025±0.00 0.152±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PE CIL_0003PE_0001 CGP 7:27092993-27102811

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001709 IEA cell fate determination
GO:0002076 IEA osteoblast development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007379 IEA segment specification
GO:0007389 IEA pattern specification process
GO:0008045 IEA motor neuron axon guidance
GO:0009952 IEA anterior/posterior pattern specification
GO:0009953 IEA dorsal/ventral pattern formation
GO:0021568 IEA rhombomere 2 development
GO:0021569 IEA rhombomere 3 development
GO:0021658 IEA rhombomere 3 morphogenesis
GO:0035284 IEA brain segmentation
GO:0042474 IEA middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IEA cell fate commitment
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045668 IEA negative regulation of osteoblast differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048703 IEA embryonic viscerocranium morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023031 hoxa2b homeo box A2b protein_coding Danio_rerio
ENSMUSG00000014704 Hoxa2 homeobox A2 protein_coding Mus_musculus

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